Neoarius graeffei (lesser salmon catfish): 132875068
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Entry
132875068 CDS
T10798
Symbol
shoc2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
132875068 (shoc2)
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Motif
Pfam:
LRR_8
LRR_14
LRR_4
LRR_LRWD1
LRR_9
LRR_13
LRR_NLRC4
LRR_At5g56370
Motif
Other DBs
NCBI-GeneID:
132875068
NCBI-ProteinID:
XP_060767641
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Position
27:complement(7973513..8022793)
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AA seq
580 aa
AA seq
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MSSALGKDKDCKEKEAKALTGKERDKEPKVPGSLGKEGKEPKTKGKDAKDGKKDASGAPP
AVAFSVDNTIKRPNPATGTRKKSSNAEVAKELIKCRDENSTRLDLSKRSIHLLPSSIKEL
TLLTELYLYSNKLQSLPAELGCLSGLVTLALSENSLTSLPDSLDNLKRLRMLDLRHNKLR
EIPAVVYRLTSLTTLYLRFNRITAVEKDIRNLSKLTMLSIRENKIKQLPAEIGELCNLIT
LDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPETIGNLSSINRLGLRYNRLSAIPRS
LAKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNM
EHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDIC
GLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQ
LTTLPRGIGHLTNLTHLGLGENLLQHLPEEIGTLENLEELYLNDNPNLHGLPFELALCSK
LSIMSIENCPLSQLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgctttaggcaaagacaaagactgcaaagaaaaggaggccaaagcgctcacg
ggtaaggagcgcgacaaggagcccaaggtgcccggcagcctcgggaaagagggcaaggag
cccaaaaccaaagggaaagatgccaaagatgggaagaaggacgcgagcggcgcaccacca
gctgtcgctttctccgtggacaacacgataaagcggccgaacccggcaaccggcacacgc
aagaagtccagcaacgccgaggtggccaaggagctgatcaaatgccgcgatgagaactcg
acacgcctagacttgtccaagcgctccatccatctgctcccgtcatccatcaaagagctg
acgctgctcaccgagctctacctgtacagcaacaagctgcagagcctcccagccgagctg
ggctgcctctcgggcctggtgacgctggcgttgagcgagaactctctcaccagcctgccg
gactcgctggacaacctaaagaggctgcgcatgctcgacctgcggcacaacaagctgcgg
gagatcccggccgtggtgtaccgcctcacgtcactcaccacgctgtacctgcgcttcaac
cgcatcaccgctgtcgagaaggacatccgcaacttgagcaagctcaccatgctgagcatc
cgcgagaacaagatcaaacagctgcccgccgagatcggggagctgtgtaacctgatcact
ctggatgtggcccacaatcagctggagcaccttcctaaagagatcggcaactgcacacag
atcaccaacctggacctacagcacaacgagctcctggacctacccgagaccatcggcaat
ctgtcaagtataaaccgtctgggcctacggtacaacaggctgtcggcaatcccccgctcg
ttagcgaagtgccgggagctggaagagttaaacctcgagaacaacaacatctccgtgctg
cctgagggtctgctctcgagcctggtgaacctgacaagtctgacgctggcacgcaactgt
tttcagtcgtacccggtgggcggcccgtcgcagttctccaccatctactcgctgaacatg
gagcacaaccgcatcaacaaaatcccattcggcatcttctcacgggccaaagtcctcagc
aagctcaacatgaaggacaaccagttgacgtcgctgccgctggactttgggacatggacc
agcatggtggagctgaacctggccaccaaccagctgactaagatccctgaggatatctgc
ggcctcgtgtccctggaggtcctcatattatccaataatctactgaagaagttacctcac
gggatcgggaacttgcggaaactgcgtgagctcgacctggaggagaacaagctggagtcg
ctcccgaatgagatcgcctacctgaaagacctacagaaacttgtgttgaccaataatcag
ctgaccacgttgcccagagggattggtcacctgaccaacctgactcacctgggattgggc
gagaacctcctgcagcacctgcctgaggagattggcactctggagaacctggaggaactg
tacctgaacgataatcccaacctgcacggtctgcccttcgagctggcgctgtgcagcaag
ctttccatcatgagcatcgagaactgccctctgagccagctcccaccgcagatcgtcgcc
ggcgggccgtccttcatcatccagttcctcaagatgcagggcccgtaccgcgccatggtc
tga
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