Neoarius graeffei (lesser salmon catfish): 132875580
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Entry
132875580 CDS
T10798
Symbol
zgc:163098
Name
(RefSeq) U2 snRNP-associated SURP motif-containing protein isoform X1
KO
K12842
U2-associated protein SR140
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132875580 (zgc:163098)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngra03041
]
132875580 (zgc:163098)
Spliceosome [BR:
ngra03041
]
Complex A
U2 snRNP components
U2 related factors
132875580 (zgc:163098)
Complex B
132875580 (zgc:163098)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Surp
RRM_1
cwf21
CID
CTK3
RRM_7
SPT2_N
SET_assoc
Motif
Other DBs
NCBI-GeneID:
132875580
NCBI-ProteinID:
XP_060768443
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Position
28:48015886..48051819
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AA seq
887 aa
AA seq
DB search
MADKKSKSTAVKRVLTKKEQEEIKKKEEEKAAEVFEEFLASFDGSEKSGVKTFVRGGIVN
ATKDEEAAEVKKSKLYRPSSKFNPVSQNASPSSAESKRSVSKRKTEEKKKSNLELFKEEL
KQIQEEREERCKRKKNDPGGAHTDLDLPLTRRSIFDDDPTVPSTTNLYIGCINPKMTEEM
LCKEFGKYGPLASVKIMWPRTEEERTRVTNRGFVAFMTRKDAERALAALDGKTVMGFEMK
LGWGKAVRIPPQPLYTPVGVLKPTAPPPPSGLPFNAQPRDRFRNDFSKSRGRSSEDFYKT
LYDAVVTVVIPSERNLLCLIHRMIEFVVREGPMFEAIIMSREKNNPDFRFLFDNKCQEHV
YYRWKLFSILQVRGESLNEWKTSMFRMFRGGSLWRPPVLNPYLHGDEEPEEDPAPFQEEE
LKKGQLKPEHREQLEVLLRGLSPRRVEIGDAMLFCLERAEAAEEVVSCIAESLSMIQTPL
QKKVARLYLVSDILYNSSAKVSNASYYRKYFESKLPQIFSDMGEAYRNIQARLQAEQFKQ
RIMACFRAWEDWAIYPESFLIQLQNIFLGLIKPGEELPESTEAASPDLDGAPLDGVPLDG
TELDGTPLDDLDGSPMTWDPSSIDGVPVDDIDGVPLGPVMDDIDGVPLDEGLDKPLPSIA
LSKWERVDDVEQSAKSNSEDELSASGVKENEADSDDDSSSDDAASPSRFEGAEFKSSLHN
FEMSESKRTRLRELEVKVMKFQDELESGKRQKKSSMSLQQQVQHYRNKLLQKEFDKDEEE
KREKSSSKQKDKVKKEDRRERAEDKSKGKERDRERDKERDRERSKKSEDRERSRGRSREG
EDKRERTRSRSPRKSKRSRSPSPQRRSRRSSSRSPHRSHKKSKKSKH
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaaaaagcaagtcgacagcagtgaagagggtgctgacgaaaaaagagcag
gaggagatcaagaaaaaggaggaagagaaggctgctgaagtgttcgaggagttcttggca
tcttttgatggcagcgagaagagcggagtgaagacgtttgttcgcgggggaattgtgaac
gccacgaaagatgaggaggcagcagaggtaaagaagagtaaactctacagaccctcctcg
aaattcaaccccgtttctcagaatgcgtcgccatcgtctgccgagtcaaaaagatctgtc
agtaaaaggaaaaccgaagagaagaagaagagcaacctggaactgtttaaagaggagctg
aagcagatacaggaagagagagaggagcgctgcaaaaggaagaaaaacgacccaggagga
gcgcacactgatcttgacctaccgctaacacggcggtcaatatttgatgacgatcccaca
gtgccctcgacgactaacctttatatcggctgcatcaatcccaagatgacagaggagatg
ctgtgtaaggagtttgggaagtacggcccgttagccagcgttaagatcatgtggcctcgg
acggaagaagagaggaccagggtgaccaaccggggctttgtggccttcatgacacgcaag
gatgcggaaagggcgctggccgctttagatggtaaaacggtgatgggttttgagatgaag
ctgggctgggggaaggctgtgagaatcccacctcagcccctgtacactcctgtaggagtg
ctgaagcccacagctccgcctcctccttcaggcctgcctttcaacgcccagccacgagac
cgctttcgcaacgacttctccaaatcccgcggccgctcgtctgaggatttctacaagact
ctgtacgacgccgtagtgacagtggttatcccatcagaaaggaacctgctgtgcctcatc
cacaggatgattgagtttgtggtgagagaaggacccatgttcgaggccatcatcatgagc
cgagagaagaacaacccagacttcagatttctgttcgataataagtgtcaggagcatgtg
tactacagatggaaactcttttctatcctgcaggtacgtggtgagagtctgaatgagtgg
aagacctcaatgttccgaatgttccggggcggctccctctggaggccccctgtcctcaat
ccctatctccatggtgacgaggagcctgaggaagaccctgcccctttccaggaggaggag
ctaaagaaagggcagctcaaacctgagcacagggagcagctggaggtgttactgaggggt
ttaagtccccgaagggtggagattggtgatgccatgctcttctgtctggagagagcagag
gctgcagaggaggtggtgtcctgcatcgctgagtcactctcgatgatacagacaccactg
cagaagaaggttgcgaggctttatctggtgtcggacatcctgtacaactccagcgccaag
gtctcgaacgcatcctactaccgcaaatacttcgagtcaaagctgccgcagatcttcagc
gacatgggcgaggcataccggaacatccaggccaggctgcaggccgagcagttcaagcaa
aggatcatggcttgctttcgtgcctgggaggactgggccatctacccggaatcctttctc
atccagctgcaaaacatcttcctggggctcatcaaaccaggagaggaactgcctgaaagc
acggaggccgcctctccagatttggacggcgctcctttagacggcgtccctctggacggg
acagaactggacgggacgccactagacgacctggatggttctcctatgacctgggatccg
tcgtccatcgacggtgtcccagtggacgatatcgatggtgtcccgctcggccctgtgatg
gacgacatcgacggcgtaccattggacgaaggcttggataagccgctaccgagcattgcc
ttgtctaagtgggagcgagtggatgacgtggaacagtcggcaaaatccaactccgaggac
gagctgagtgcgagtggtgtgaaggagaatgaagcggactcggatgacgacagcagcagc
gacgatgcggcaagccccagcaggtttgagggggcggagtttaaaagcagcctgcacaac
ttcgagatgtctgagagcaagcggacccgtctccgagagctggaggtgaaggtgatgaag
tttcaggatgagttggagtcggggaaaaggcaaaagaaatccagtatgagccttcaacag
caagttcaacactacagaaacaaactgctccagaaggagttcgataaggacgaagaggaa
aagagggagaagtcatcgagcaagcagaaggacaaggtgaagaaggaggacaggagagag
agagccgaggacaagagcaaagggaaagagcgcgatagagagcgggacaaggagagggat
cgagagaggagtaagaagagcgaggaccgagagaggagcaggggacggagccgggaagga
gaggacaagagagagaggacacgttcccgttcgccgcggaagtccaagcgttcccgttct
ccatcgccacagcgcaggtccagacgctcctcgtcccgatctccacaccgctcgcacaag
aaatccaaaaagagcaaacactga
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