Neoarius graeffei (lesser salmon catfish): 132875800
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Entry
132875800 CDS
T10798
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
132875800 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngra03400
]
132875800 (lig3)
Enzymes [BR:
ngra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132875800 (lig3)
DNA repair and recombination proteins [BR:
ngra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
132875800 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
132875800
NCBI-ProteinID:
XP_060768853
LinkDB
All DBs
Position
28:complement(40479216..40531763)
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AA seq
995 aa
AA seq
DB search
MHGLSFCKAVRTLCRTFLLCPRPLVQRCRPLSHAWGFALPARHPSRHFSLTSPSFLAVSR
TTWQDDRPTMAEQRYCVEYAKRGQAGCKKCKDKIVKGLVRIGKIVPNPFSESAGEMKEWY
HVKCIFEKLERARATTKKIEDITDLEGWEELQDEEKELINKLVADLAAKTNASPKKVVQA
KLNTSGRLSAPLADPTVNAPRKFSGFTATKAGPSSSSPGPSSPAKASPGSVLSAQFCQPD
HKDCLFREFRKLCGMVAEKSSYNAKTEIIKNFLKKGSGGDKFKGDLYLTVKLLLPGVVKS
VYNLNDKQIVKLFSRILNSNQDEMVRDLEQGDVSETVRMFFEASKSFPPSTKSLLTIQEV
DASLNRLAQLTKEDEQQTELEDIAKKCTGNDLKCYIRLVKHDLKINSGAKHVLDALDPNA
YDAFKASRNLGDVIDRVLRNQQEALNGGGPRKLLSVEATLMTPVQPMLAEACKSIEHAMK
KCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKEFIPQAFAGGHSMIL
DTEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVCLFVFDCIYFNGVSLMDKPLCERRKFL
HDNMVEVPNRILFSEMKHVTKAADLAEMITRVIREGLEGLVLKDIKGVYEPGKRHWLKVK
KDYLNEGAMADAADLVVLGAFYGTGSKGGTMSSFLMGCYDPASKKWCTVTKCSGGYDDAT
LARLQKELDVIKIGRDPSKIPPWLNIIKNYYPDFLIRDPEKAPVWEITGAEFSKSEMHTA
DGISIRFPRCTRMRDDKDWKTATNLPQLKELYRVSKERCDFEVTAGPSTSKDDKSSSGGD
SGGSSPSTSNSTPSSNKAKNGHTPKPKPVKPATPSPAKRKLPTAEHSAKKIKVKTIRSNG
QSTAKASPAKAADPQPEQTLLNIFTGVKLYLPESAQDFAKLRRYFVAYDGDLIPDYNAAS
ATHTLAEPEEGSQAQKVSANWIWQCIKKRRVVPPC
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggctcagcttttgcaaggcagtaagaaccctgtgcaggactttccttctgtgc
ccacgtccacttgtgcagcgctgtcgccctctgagccacgcctggggctttgctttgcca
gcgagacacccgtcgagacacttcagcctcacgtctccgtctttcttggccgtctctcgg
accacgtggcaggacgaccggccgaccatggccgagcagagatactgcgtggaatacgcc
aagcgtggccaggcaggctgcaaaaaatgcaaggacaagatcgtgaaggggctggtgcgc
atcgggaagatcgtacccaacccgttcagcgagtctgcaggagagatgaaggagtggtat
cacgtgaagtgcatctttgagaagctggagcgagcgcgggccaccactaagaagattgag
gacataacggacctggagggctgggaggaactgcaagacgaggaaaaagagctgatcaat
aagcttgttgcagacctggctgccaagactaatgcaagtccaaagaaggtggtccaagcc
aagttaaacaccagcggccggttatcagctcctcttgctgatccgacagtgaacgctcca
cgcaagttttccggcttcacagcaacaaaggcaggtccgtcatcatcgagcccaggcccg
tcgtctcctgctaaagcctcaccaggcagtgttctgtccgctcagttttgccagcccgac
cataaggactgcctgttccgcgaattccgcaagctctgcggcatggtggctgagaagtcc
agctacaacgcaaaaaccgagatcatcaagaacttcctgaagaagggttccggtggagac
aagtttaagggagatctctacctgacagtgaagctgctcctcccaggcgtagtgaaaagc
gtttacaacctcaacgacaagcaaatcgtcaaactcttcagccgcatcctcaactccaac
caggacgagatggtgcgcgacctggaacagggagatgtctccgagacggtgaggatgttt
tttgaagccagcaagtcgtttcctccttcaaccaagagtctgctgaccatccaggaagtg
gacgcgtcgctaaaccgcctggctcagctcactaaagaagacgagcagcagacagaactg
gaggacatcgcgaaaaaatgcacagggaacgacttgaagtgttacatccgtctggtgaaa
cacgacctgaagattaattctggtgccaaacatgtcctggatgctttagaccctaatgcc
tacgacgccttcaaagcctctcgaaacctcggcgacgtgattgaccgagtcctacgcaat
cagcaggaggcattgaacggcggcggcccgaggaagctcttgagtgtcgaggccactctt
atgacccctgtgcagcccatgctggcagaagcctgcaagtccatcgagcacgccatgaag
aaatgcccaaatggaatgtactcggagatcaagtacgacggcgagcgcgtgcaagtgcac
aagaacggagatcacttcagctacttcagccgcagcctcaaacccgtgcttcctcacaag
gtggcccattttaaagagtttatacctcaggcttttgctggaggccacagcatgattcta
gacactgaagttctcttgattgataccaagaccagtaagcctctgcccttcggaacatta
ggagttcacaaaaaagcggcgttccaagacgcacaagtctgcctgtttgtttttgactgc
atttattttaatggtgtcagcctcatggataagccactttgcgagagaagaaagtttctc
catgacaacatggtggaagtcccgaacaggattctgttttcagagatgaaacacgtcaca
aaagctgctgacctggcggagatgatcacgcgagtcatcagagagggactggagggactt
gttctgaaagacatcaagggagtgtatgaacccggtaaacgccactggctgaaggtaaag
aaagactacctgaatgaaggcgcaatggcagacgcggccgatttagtggttttaggggcg
ttttatggaaccggctcaaaaggtggaaccatgtccagtttcctcatgggctgctacgat
cctgcctcaaagaaatggtgcacggtgacgaaatgctccggaggctacgacgacgccacg
ctcgccagactgcagaaggagctggacgtcattaaaatcggcagggatcccagcaagatc
ccaccatggctaaatataatcaagaactactatccggattttctcatccgagatcctgag
aaagccccagtctgggagattacaggagccgagttctccaagtcagaaatgcacacagcc
gatggcatctccatccgtttcccccgatgcacccgtatgcgtgacgataaggactggaag
acggccaccaatcttccccagctcaaggaactctaccgtgtctcgaaggagagatgcgac
tttgaagtgacagccgggccgtctacaagcaaagacgacaagagttcatcgggaggagac
agcggaggcagctcaccgtccacctctaacagcacgccgagctcaaacaaagccaaaaac
ggtcacactccaaagccaaagccggtcaaacctgcaactccgtcccctgccaagaggaag
ctgcccactgcggaacacagtgcaaagaagatcaaggtcaaaacaattcgcagcaacggc
caaagcacagcaaaagcttctccggctaaggcggctgacccacagcccgaacagactctg
ctgaacatcttcaccggagtaaagctgtacctcccggaatcggcgcaggactttgcgaag
ctgcgccgctacttcgtggcgtacgatggagatctcattccggattacaacgccgcctct
gcgacgcacacgctagccgagcccgaagaggggagccaggcccagaaagtcagcgccaac
tggatctggcagtgcataaagaaaagaagagtggttccaccttgctga
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