Neoarius graeffei (lesser salmon catfish): 132876045
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Entry
132876045 CDS
T10798
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngra03041
]
132876045 (ythdc2)
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132876045 (ythdc2)
Spliceosome [BR:
ngra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132876045 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
Ank
ATPase
nSTAND3
AAA_22
PhoH
ABC_tran
AAA_7
SRP54
AAA_23
AAA_29
TrwB_AAD_bind
AAA_30
Motif
Other DBs
NCBI-GeneID:
132876045
NCBI-ProteinID:
XP_060769253
LinkDB
All DBs
Position
28:6342707..6386454
Genome browser
AA seq
1426 aa
AA seq
DB search
MSRSNAASQKANMNPSKLSRSQKAKGLKDIRVDEEVKIAVNIALERFQYSDQRDMEFPSS
LTSTERAFIHRLAQSLGYVSKSRGKGIHRFLTIWKKDRPESAQSIMTFSLTHNSKHVVQN
LLQRFPITSKERTDLLQHTERGLAVSPEVAGNGRDKNRMSGRLNNGIPQVPQRRGPSELE
CFRRALPVYERQEEIVTTIKENQVVLIVGETGSGKTTQIPQFLLDDCSQKGTPCRIFCTQ
PRRLAAIAVAERVAAERGENVGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDGVL
STVTHVIVDEVHERDGLTDFLLTKMRDMLQKMPSLKLILSSAALDVELFIRYFGHCPIIY
IKGRPYDVKPLFLEDILRTTGYTNKEMAKYKAEMQKEAKQQTSLTEWCEVKAGVSPPESQ
KNRTSAGVLQDTDLLDSGGDSVFSQMSEKDVTSLEPWLLKEMDTCISSIFLQQDADAFVQ
LFNLIVNESISVDYRHSETSATPLMVAAGRGFISQMEQLLSMGASVHVKASNGWTALDWA
KHFNQTEAVDLLESHISSLEAGQLDESSLVQSASGELTAQDQELLKAYHHSFDDEKVDLD
LIMHLLFNICQSSDEGAVLIFLPGYDEIVGLRDRILYDDKRFVDQQHRYQVFTLHSNMQS
LDQRKVLKPSPVGVRKIILSTNIAETSITINDVVFVIDSGKVKEKAFDALNHVTMLKMVW
ISKASALQRKGRAGRCRPGICFHLFSQLRFNNMLEYQVPQLLRMPLQELCLHTKLLAPVS
CPIAEFLAKAPEPPHLLTIKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKMVLC
AVVLKCLDPILTIACMLSYREPFVLPAQASQKRAAMQCRRCFAANTFSDHMALLRAFQAW
QKARTDGWERSFCEKNFLSQATMEIVIRMRAQLLGQLRAIGFVRARGCSDIRDVNLNSEN
WAVVKAALVAGMYPNLIHVDHDNKTLRGAREKKVRFHPTSVLSQSQYKKIPPANAQAAAV
QSLPTDWLIYDEMTRAHRIASVRCCTVVTPLTVAVFGGCAKLPSTALQEPSTPRVDDALC
ESSDSDNEARSTDQLAQMKIDEWLNFKLDREISSMVFQLRQRWHSLFLRRIRCPSKPWSQ
LDEATILAVVSVLGAEEQAANLQQPTGIGQRPKPISPDEPQHQSNSWRTNGGHRSVMDQS
YETPSTQDRSPKVQSAVSQSKSQRDKGAAFSKRSSNDHLPVKSESPTFTSPSASPSSTST
KGPGVLRSPLAGVSKSPSLRSRLSVRYFVMKSSNLRNIELSQQRGIWSTTPNNEHKLNRA
FQENSTIFLIFSVQGSGHFQGYARMSSEIGSERCKDWGAAGLGGVFSVEWIRKESLPFQV
THQVLNPWNENKKVQISRDGQELEPQAGAQLLQLWDRFPVKQQQEL
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggtcgaacgccgcctctcagaaagcgaacatgaatccttccaaactgtcacgt
tcacaaaaagccaaagggctgaaagacatcagggttgatgaagaagttaagattgcagtg
aacattgcactggagaggttccagtacagcgaccagagagatatggagtttccttcttca
ctgaccagcacagagagagcgttcatacatcgccttgcacaatctctgggttatgtttca
aaaagcagaggtaaaggaatacaccgcttcctcacgatatggaagaaggaccgtccagag
tccgcacagtccattatgacctttagtcttacccacaactccaaacatgtggtccaaaac
ctgctgcagagattccccattacgagtaaagagcgcactgatctgctccagcacactgag
agagggctcgctgtttctccagaagttgctggtaatgggcgagacaagaacaggatgagt
gggcggctgaataacggcatccctcaggtccctcagaggagaggtccgtctgagttggag
tgttttcggagagcgttgcctgtctacgagcggcaggaggagattgtgacgaccatcaag
gagaaccaggtggtgctgatcgtgggtgaaacgggttcaggaaaaaccacgcagattcct
caattcctgctggatgactgcagtcagaagggaactccctgtcggatcttctgtacgcag
cccaggaggctggcagccatcgctgtggctgagagagtggcggcggagagaggagagaac
gtcggccagaccatcggctaccagatccgtctggagagcagagtttctcccaagacttta
ctgacgttttgtacaagtggcgtgctgctcagaacactgatggctggagatggagtcctc
tccaccgtcacgcatgtcattgtggacgaggtccatgagcgggacggcctgacagatttt
ctcttgaccaagatgcgggacatgctgcagaagatgccttctctgaagctcattctctcc
agtgctgctctagatgtggagcttttcatcagatactttggtcattgcccgattatttac
atcaaaggacggccatatgacgtgaagccactttttctggaggacattttgcggaccact
ggctacacaaacaaggagatggcaaaatataaggcagagatgcaaaaagaagcaaagcag
cagacgtctcttacagagtggtgtgaggtgaaagcaggtgtatccccgccagagtctcag
aagaaccggacatctgccggcgtcctgcaggacactgacctgctagacagtggaggggac
agtgtcttcagccagatgagtgagaaagatgtgacctcgctggagccgtggctgctgaag
gaaatggacacttgcatctcgagtatctttctgcagcaggacgctgatgccttcgtgcag
ctttttaacctgattgtcaacgagagcatcagtgtggactacaggcacagcgaaacaagt
gccacgcctctgatggtggctgcagggaggggcttcatcagtcagatggagcagctcctc
agcatgggggccagtgtgcacgttaaagcttcgaatggctggactgctcttgactgggcc
aaacatttcaaccagactgaagccgtggatctgctggagtcacacatctcatctctggag
gcaggtcagctggatgagtcgtccctggtgcagtcagccagcggggagctcactgctcag
gaccaggagctgctcaaggcttaccaccacagctttgatgatgaaaaggtagacctggac
ctcatcatgcacctcctcttcaacatctgtcagagctctgatgaaggtgcagtcttgata
tttttgccaggatatgatgaaatagtcggactgcgagaccgtattctttatgacgataaa
agatttgtagatcaacagcataggtaccaggtgttcactttacactccaacatgcagagc
ttggatcagaggaaagttctgaaaccatctccagttggggttcgcaaaattattctctca
accaacattgctgaaacgagcatcaccatcaacgatgttgtctttgtaattgactctggc
aaggttaaagagaaagctttcgatgccctgaatcatgtgaccatgctaaagatggtgtgg
atatcaaaagcaagtgcattacagcgtaaaggaagagctggacgctgccgcccgggaatt
tgtttccatctgttcagccagctgcgcttcaataacatgctggagtatcaggttcctcag
ctgctccgtatgcctctgcaggaactctgtcttcacactaaacttttagcccctgtttcc
tgccccattgcggagttccttgccaaagccccagagccaccacacctactcactatcaag
aatgctgtgcagatgctcaagaccatagatgccatggacccatgggaggacctgaccgag
ctaggttaccatctagcagacctgcccgtggagccacatcttgggaagatggtgctatgt
gcggtggtgcttaaatgcctggacccgatcctcaccatcgcctgcatgctgtcctacagg
gaaccgtttgtgctgccagctcaggcttcacaaaaacgagccgccatgcagtgcaggaga
tgtttcgctgccaataccttcagtgatcacatggccttgctccgggcttttcaggcatgg
cagaaggcccgcactgatggctgggaaaggtctttctgtgagaagaacttcctgtcgcag
gccaccatggaaatcgtcatcaggatgcgcgctcagctgttgggccagcttcgtgctata
ggttttgttcgcgctcggggttgcagcgatatccgtgatgtaaatctgaactctgagaac
tgggcagtggtgaaggcagcactcgtagcaggcatgtaccctaacctgattcacgtagac
catgataacaaaacactccgaggcgccagagaaaagaaggttcgcttccacccgacgtct
gtcctgagccaatcccaatacaagaagatccctccagctaatgcccaagcagcagcagtt
cagtctctgcctacagactggttgatctatgacgagatgacacgagcacacaggatagcc
agcgtgcgctgctgcactgtggttactccgctaactgtggctgtgtttggaggttgcgcc
aaactgcccagcacggcgctgcaggaaccttccacaccccgagtagatgatgctctgtgt
gagagcagtgacagcgacaatgaggctcgttccacagatcagctggctcagatgaagatc
gacgagtggcttaacttcaaattggatcgagagatatcgtccatggtgttccagctgaga
cagcgttggcatagcctgttcctgagacggatccgttgcccttctaagccgtggtcccag
ctggacgaggcgacgatcctggccgtggtgtcggtgctgggtgccgaagagcaagcggcc
aacctgcagcagcccacgggtataggccagagacccaaacccataagtccagatgagcct
cagcaccagtcgaacagctggaggactaacggtggacataggagtgtcatggaccagagc
tatgagactccttccacacaagacaggtctccaaaagtacagtccgctgtctctcagtct
aagagccaaagagataaaggtgctgccttttccaaacgttcaagcaatgaccatctccca
gtaaaatcagagagccccaccttcaccagtcctagtgccagtccctcatccacttcaaca
aaaggaccaggtgttcttaggtcacctttggctggggtttccaagtcgccatctttgagg
tccagactatcagtgcgttacttcgtcatgaagagcagcaacctgaggaacatcgagctc
tcgcagcagaggggcatctggtccactacaccgaacaacgagcacaaactgaacagagcc
ttccaggagaacagcaccatcttcctcatcttctccgtgcaaggctccggacatttccag
ggttatgctcggatgagttcggagattggctcggagcgctgcaaggactggggtgctgcc
ggtctgggaggagtcttcagtgtggagtggatccggaaagagagtctgcctttccaggtc
actcatcaagtcctcaacccctggaacgaaaacaagaaagtgcagatcagccgggacgga
caggagctggagcctcaggctggagcacagctgttgcaactgtgggatcgtttccccgtc
aaacagcagcaagagctgtga
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integrated database retrieval system
