KEGG   Neoarius graeffei (lesser salmon catfish): 132876228
Entry
132876228         CDS       T10798                                 
Name
(RefSeq) histone deacetylase 2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ngra  Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03082  ATP-dependent chromatin remodeling
ngra03083  Polycomb repressive complex
ngra04110  Cell cycle
ngra04330  Notch signaling pathway
ngra04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ngra00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    132876228
   03083 Polycomb repressive complex
    132876228
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    132876228
   04350 TGF-beta signaling pathway
    132876228
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    132876228
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ngra03036]
    132876228
Enzymes [BR:ngra01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     132876228
Chromosome and associated proteins [BR:ngra03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     132876228
   HDAC complexes
    Sin3A-HDAC complex
     132876228
    BRAF-HDAC complex
     132876228
    REST complex
     132876228
    SHIP complex
     132876228
    MiDAC complex
     132876228
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     132876228
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    132876228
  Chromatin remodeling factors
   NuRD complex
    132876228
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 132876228
NCBI-ProteinID: XP_060769479
LinkDB
Position
2:371192..379029
AA seq 489 aa
MAFTLHGAVKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ATADEMTKYHSDDYIKFLRSIRPDNMSEFSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSA
AGAVKLNRQQTDIAVNWAGGLHHAKKSEASGFCYINDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDDSYE
QIFKPVMARVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIRGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDTDIPDELPYNDYFEYFGPDFKLHISPSNMTNQNTQEY
MDKIKQRLFENLRMLPHAPGVQMQPIPEDSVPDDTADEDTEDPDKRMSIRASDKRIACDE
EFSDSEDEGEGGRRNVANHKKGVKRARVEDDRKDGEEKKGEVKEEEKAKEINSDKHDLKS
VKTEQASST
NT seq 1470 nt   +upstreamnt  +downstreamnt
atggcgttcactctgcacggcgcggtgaagaagaaagtctgctattattatgatggtgat
attggtaattattattacggacagggtcaccccatgaagcctcatcgaatccgcatgacg
cacaacctgctgctgaattacggcctgtaccgcaagatggagatctacaggcctcataaa
gcaacagcagatgaaatgacgaagtatcacagcgacgattacatcaaattcctgcgctcc
atccgaccagacaacatgtccgagttcagcaaacagatgcagcgctttaacgtgggcgag
gactgcccagtgtttgatggactgtttgagttctgtcagctctctacaggaggttcagca
gctggtgcggtgaagctgaaccgtcagcagacggacattgccgtgaactgggctggaggt
ctacaccacgctaagaagtcagaagcgtccgggttctgctacattaatgacatcgtactc
gccatactggagctgctcaagtaccaccagagggtgctgtacatcgacattgatattcac
catggcgacggtgtggaggaggcattttacaccactgaccgcgtcatgaccgtatccttc
cacaagtacggagagtacttccctggaactggagacctgcgggatattggtgcaggtaaa
ggtaaatactacgcagtgaattttcctctgagagatggaatagatgatgactcgtatgaa
cagatcttcaaacctgtgatggcgagggtgatggagatgtatcagccgagtgctgtggtg
ctgcagtgtggagctgattctctctcaggagaccggcttggctgcttcaacctcaccatc
cgtggtcatgcgaagtgtgtggagtatatgaagtcatttaatctgccgttgttgatgttg
gggggagggggttacaccattcgcaatgttgcccgctgctggacctatgaaactgccgtc
gccctggataccgacatccctgatgagttgccgtataatgattattttgaatattttggt
ccggactttaagctgcacatcagtccgtctaacatgaccaaccagaacacgcaggagtac
atggacaagattaagcagcgtctctttgagaacctgcgcatgttaccccacgcccccggg
gttcagatgcagcccattccagaggacagtgttcctgatgacactgcagacgaggacacg
gaggacccagacaaacgcatgtccatccgagcgtcggataagaggattgcgtgtgatgaa
gagttctcggactctgaggatgagggggaggggggacgcaggaacgtggccaatcacaag
aagggagtgaagcgggcacgggtggaggacgacaggaaggacggggaggagaagaaagga
gaagtgaaggaggaggagaaagcgaaggagatcaactcggataaacatgacttaaaaagt
gtgaaaacggaacaggccagcagtacttga

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