Neoarius graeffei (lesser salmon catfish): 132881553
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Entry
132881553 CDS
T10798
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngra03041
]
132881553 (ddx1)
03016 Transfer RNA biogenesis [BR:
ngra03016
]
132881553 (ddx1)
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132881553 (ddx1)
Spliceosome [BR:
ngra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132881553 (ddx1)
Transfer RNA biogenesis [BR:
ngra03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
132881553 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
132881553
NCBI-ProteinID:
XP_060770108
LinkDB
All DBs
Position
2:complement(35424214..35469272)
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AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRATVKTGGAVFNKWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTQAVTKGKYYYEVSCHDQGLCRVGWSTGQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDMDSGQLSFSKNGNDLGLAFEIPQNLKRQPFFASCVLKNAELKF
NFGGEPFKNAPKEGFIALDQAPDGHVVKTTQTGSATVSQVKTSSHSPKALIVEPSKELAE
QTLNNVSQFKKYVTNPKLRDLLIIGGVAAKEQLSVLESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLTAGYTDFIMRVYSKIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKNDRIWERLGKNHIRTDEVHAKDYTRPGAN
TAEMWSEAIKILKGEYTIRAIKEHKMDQAIIFCRTKIDCDNMEQYLIAQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLDRFKKREVRFLICTDVAARGIDVRGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEEGGCTIWYNEKELLG
EIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRAAGGGLYKGHVDILAPTVQELANLER
EAQTSFLQLGYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgtttggtgaaatgggcgtgatgcctgaaatcgctcaggctgttgaagagatg
gactggctgcttcccactgacatccaagctgagtccattcccctgatccttggtggagga
gacgttctcatggctgctgagacaggaagtggcaaaactggggccttcagcatcccagtg
atccagattgtgtacgagactctgaaagatcagcaggaggggaagaaaggtcgtgctaca
gtgaagacaggaggagcagtgtttaataaatggcagatgaacccatacgaccgaagccca
gcatttgcgatcggtccggacgggctttgttgccagagcagagagtttaaggagtggcac
ggctgccgttccacacaggccgtgactaaaggaaagtattactatgaagtctcctgccac
gaccaaggcttgtgcagggtcggatggtccactggtcaggcatctctggacctgggtaca
gacaagtttggcttcggctttggaggaacaggaaagaaatcccataataagcagtttgac
agttatggagaggagttcactatgcacgacaccatcggatgttacatcgacatggacagt
ggccagctgtccttctccaaaaatggaaatgatttgggcttggcatttgagattccgcag
aacttgaaacgtcaaccattcttcgcctcctgtgtccttaagaatgctgaactgaagttt
aattttgggggagagcctttcaaaaatgcccccaaagaagggttcattgctcttgaccaa
gcacccgatggccacgtggtcaaaactactcagactggtagtgctacggtgagtcaagtc
aaaacaagctcccacagcccaaaagctctgatcgtggagccgtcgaaagaattggccgag
cagaccctgaacaacgtcagccagtttaagaaatacgtgaccaatcccaaactacgagat
ttgctgatcatcggaggcgtggcagccaaagagcagctgtctgttttggaaagcggggtt
gatatagtggttggcacgcctggcaggcttgatgatctcatatccacaggcaaactcgat
ctgtcccaagttcgcttcctggttctggatgaatgtgatggactgcttacagctggctat
accgacttcatcatgagggtctacagcaaaatcccccagatcacctctgatggaaagaga
ctgcaggtgattgtgtgctcagcaaccctgcactcgttcgatgtgaagaagctgtcggag
aagatcatgcacttcccaacatgggtggacctgaaaggtgaagactctgtgcctgagacg
gtccatcatgtcgtggtgccagtcaaccctaaaaacgacaggatttgggaaaggctgggc
aaaaaccacatccggactgatgaagtgcatgcaaaagactacacaaggcctggagcaaac
actgcagagatgtggtcagaagcaatcaaaatcctgaagggcgagtacacgatccgtgca
attaaggagcacaagatggaccaggccatcatcttctgcaggaccaagattgactgcgac
aatatggagcagtacctgatcgcacaaggaggaggtcctgataaaaaagggcatcagttc
tcatgtgtctgtcttcacggtgaccggaagccgaatgaacgcaaatacaacttggacagg
ttcaagaaaagagaggtgaggtttttgatttgcacagacgtagcagccagaggaatcgat
gtccgtggcgttccatacgtcattaatgtgaccttgccagatgaaaaacagaactatgtg
catcgcatcggaagagtgggcagggcagagaggatgggtctggccatttctctggtcgcc
atggaaaaggagaaggtatggtatcacgtttgtcctaacagaggccgaggctgctataac
accaggttaaaggaggaaggaggctgcactatatggtacaacgagaaagagctgctggga
gaaattgaggaacacctgaagtgcacaattactcagtgcgagccagacatcaaagtgccc
gtagacgaatttgatggcaaggtcacttatggccagcgcagagctgctggaggtggtctc
tataagggccatgtggatattttggcccccaccgtacaggaacttgctaacctcgagcga
gaggcacagacatctttcctgcaactgggctatctccccaatcagctcttcaaagctttc
tga
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