Neoarius graeffei (lesser salmon catfish): 132882988
Help
Entry
132882988 CDS
T10798
Symbol
lrfn5b
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
132882988 (lrfn5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ngra04515
]
132882988 (lrfn5b)
04990 Domain-containing proteins not elsewhere classified [BR:
ngra04990
]
132882988 (lrfn5b)
Cell adhesion molecules [BR:
ngra04515
]
Immunoglobulin superfamily
SALM family
132882988 (lrfn5b)
Domain-containing proteins not elsewhere classified [BR:
ngra04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
132882988 (lrfn5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
Ig_3
I-set
LRR_4
ig
Ig_2
LRR_9
V-set
C2-set_2
fn3
Sp38
LRR_Zer-1
Ig_5
FN3_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
132882988
NCBI-ProteinID:
XP_060772089
LinkDB
All DBs
Position
3:complement(101275717..101278612)
Genome browser
AA seq
789 aa
AA seq
DB search
METLFVYVMVVIMAVKAQKIQICPKRCICQVLPPNLATLCDKKGLLFVPPDIDRHTVELR
LGDNFITTVKRKDFANMTKLVDLTLSRNTIGSITPHAFNDLENLRALHLDSNRLTRITND
TFSGMSKLHHLILNNNQLMYIHIGAFNDLLALEELDLSYNNLESAPWVAIQHMTSLHTLS
LDHNMIDYIPEGTFSGLMKLKRLDVTSNKLQKLPPDPVFQRAGVLATSGILGPSSFALSF
GGNPLRCNCELLWLRRLRREDDLETCAAPQHLSGRYFWTVSEEEFLCEPPLITRHSQETR
ALEGQHVTLRCKARGDPDPVIHWIAPDGRLVSNSTRTVVHTDGTLDIVISTVKDSGSFTC
VASNPSGEAQQTVQLFIIKLPHFTNDTSLVQEPDPGSSDIATSTKSGGDGSTAISNTKAG
QEKRVLISEITSSSALVKFNLQRNIPGIRMFQIQYNGTYDDSLVYRMIPPTSKNILVNNL
AAGTSYDLCVLAIYDDAMTTLTATRVVGCVHFATEPQYLRCHFMQSQFLGGTIVVIIGGI
IVASVLSFIIFLIVRYRVCNQDGEDKGVELGEIRSQSRSEQLQVCGIIKTMSKQVLGVEM
DACRKVSPQLESVPTLGTTSGPRPSKPALPDCTVTTSAASHSWHPASPNTQRPMHAASHK
PAGPQKPDTEISVELDNTNKNNSAKARPKSAQIRAYSTTVMPVSRRVQLESSRYMTVPVG
CMRVSRRHSLNVDSCKQTGYGSLLQQTGSLRSKRSLSMSGGDLPQLDVSAKIHGKDSLSR
SEWVLESTL
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggagaccctatttgtttatgtgatggtcgtgatcatggcagtaaaagcccagaagatc
caaatatgtcccaaacgttgcatttgtcaagtgctgcctcccaacttagccactttatgt
gacaaaaaggggctgctttttgttcccccggacattgacagacacacagtagaactgcga
cttggtgacaattttatcacaactgtcaaacgaaaggactttgccaacatgaccaagctt
gtagacttgacactatccaggaacacaataggctctataacaccccatgctttcaatgat
ctggagaacctacgtgccctgcacttggacagcaaccgtctgacacgaatcacaaacgac
acctttagtggcatgtccaagctccatcatctcattctgaacaacaatcagctcatgtat
attcacataggagcctttaacgaccttctggcccttgaagagcttgatctctcttacaac
aatctagagagtgccccatgggtggccatccagcacatgactagcctgcacactttaagt
ctggaccacaacatgatagactacatacccgaaggaacattttcaggcctcatgaaactc
aaacgtctggatgtcacttccaacaagcttcagaagcttccacctgatccagtcttccag
cgtgcaggtgttttagccacatcgggtattttgggtccgtcatcatttgcgttgagcttt
ggggggaacccattacgctgcaactgtgagttgctgtggttgaggagactacggcgtgag
gatgacctggagacttgcgctgctccacagcacctctcaggacgctacttctggacggtt
tctgaagaggagttcctatgcgagcctccactcatcacacgtcattcccaggagacccgg
gcattagaaggccaacatgttactctgcgctgtaaagcaaggggtgatccagatcctgtt
attcactggattgcccctgatggtagactggtgtccaactcaacccgaacagtagtgcac
actgacgggacactagatatcgtcatcagcacagtgaaagattctggatcgttcacatgt
gtggcatccaacccttctggagaagcgcagcagactgttcagctatttatcatcaaactg
ccacatttcactaatgacacaagcttagtacaggaaccagatcctggctcatcagatatt
gctacgtccaccaaatcaggtggagatggtagcactgccattagcaacaccaaagctggg
caggaaaaacgggtgctgatttctgaaattacatcctcctctgctctggtgaaatttaac
ttacaacggaatataccagggatccggatgttccagatacaatacaatggcacttatgat
gactcactagtctacagaatgatccctccaaccagtaaaaacatcctggtgaacaacctg
gcagctgggacatcgtatgacctctgtgtgcttgcaatttatgatgatgcaatgaccact
ctcacagctacccgcgtggtggggtgtgttcactttgcaacagagccccagtacctccgg
tgccacttcatgcaatcacagttccttggaggtaccattgtcgtcatcattggaggtatc
attgttgcctcagtcttgtctttcatcatcttccttattgtacgttatcgagtgtgcaac
caggatggcgaggacaagggagtggagctgggagaaattcgttctcagtccaggagcgag
cagcttcaggtctgtggaatcatcaagaccatgtccaagcaggttctgggtgtagagatg
gatgcatgtcggaaggtttccccacaactggagtcagtgcccacgttaggaactacgtct
gggcctcgaccctctaaacctgcccttcccgactgtactgttactacctctgccgccagt
cacagctggcatcctgcctcccccaacacccagcgccccatgcatgctgcctcacacaaa
cctgcaggccctcaaaagccagacacagagatcagtgtggagcttgacaacaccaacaaa
aacaattcagccaaggcacgtcccaaatctgcccaaatacgagcctactccaccacagtg
atgccagtgtccagaagggtacagctcgagtcctcacgctacatgactgttccagtgggg
tgtatgagagtgagccgtagacactctttaaacgtagactcctgtaagcagaccggctat
gggagtctcctgcagcagactggcagcctccgctccaaacgcagtctgtccatgagtggt
ggagatcttccccagctggacgtttcagccaaaatccatggaaaagactccctgtccagg
tcagaatgggttctagaaagcacactttaa
DBGET
integrated database retrieval system
