Neoarius graeffei (lesser salmon catfish): 132883326
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Entry
132883326 CDS
T10798
Symbol
pcdh7a
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-7
KO
K16498
protocadherin delta 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
132883326 (pcdh7a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ngra01009
]
132883326 (pcdh7a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ngra04515
]
132883326 (pcdh7a)
Protein phosphatases and associated proteins [BR:
ngra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132883326 (pcdh7a)
Cell adhesion molecules [BR:
ngra04515
]
Cadherins
Protocadherins
132883326 (pcdh7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
132883326
NCBI-ProteinID:
XP_060772773
LinkDB
All DBs
Position
3:37651892..37711529
Genome browser
AA seq
1321 aa
AA seq
DB search
MGSLSVGAVNTPLGCYLVLVLQLLTQVHSALRYRVAEEGPADVRIGNVASDLGLATSGIG
TGDVTFALESGAEYFKIDNVTGELTTSTRRIDREKLPQCAMIFDENECFLDFEVSVIGPL
QSWVDLFEGRVVVTDINDNTPSFPSPMLTLAVEENRPIGTLYLLPTATDRDFGRNGIDRY
ELVHQDAISGSRRPNPSMATGTERNGGGERRRVQEAGPTQNGRSNSVFELQVADTPDGQK
QPQLIVKGPLDRETRDSYELILRVRDGGNPPRSSQALLRISITDVNDNNPRFERTVYEAE
MAENTPPGTPVLQVRASDRDVGVNGQVEYVFGAATESVRRLLRLDEASGWLSVLHRIDRE
EVSQLRFIVTAKDRGQPPRTDRATVILSVRDENDNVPVIDIRKIGRILVRDGAAMVPENV
LVDTPVALVQVSDRDQGENGAVTCTVVGDVPFTLKPAGENALAPPPAGDDAFERNKKKFF
LHTSALLDYETTRDYMVTIVAVDSGSPSLSINSTLMVRVVDINDHAPTFAQNLVEVHFAE
NNTPGERVVTIVASDADSGKNAEIAYSLDPSVNGAFYIDTDNGDIRAAGVLDREQRDRYE
FRVIARDKGSPSLQGSTTVVVQITDRNDNAPKFVQDVFMFYVKENLLSNSPVGMLTVTDA
DDGENAELSLFVEEDDDDEEENEAGSRKQETLIKTFSIENNTGTIFSALSFDRERRSTYK
FRVRAIDGGDPPRSATATVSLYVTDENDNAPSVIAPSNDSYTFLTPSSSARTVVSTIKAL
DSDAGSNADLRYALIGGNPFHLFEIGPSNGVITLTEPLERRHRGLHRLVVRVNDSGVPSL
CATALIHIFVNESLTNATLVDAQVARSLGVPLSLDIAGDPDNERILGKQRLSVAIGVLSG
AAAVVLIILLVLTARQCGALGKNGYEAGKKEPEEDFFTPXVHPPSRRLRKKKRRDAEKRD
VRSKSERSLYAGIVTVNSCRRTDEEEEEEEEVEEEQEVSQRIGARRHRSSPDLARHYKSS
SPLPAVHLQPNSPPVEGKKHQAVQELPPTNTFTGNGNGNADAMSLSSDHCSDYSCHNNKY
SKQPLRRVTFSVATDTGCYDSGVDESETPSSKSSKIGVLSLPEDGYERTTPEGSVGEEEH
VENDSRQLPDVALTGKCTRDCGEYGHSDTCWMPVQSSPRRLQGNGAPRQRLSSFTSAGDD
NNNHDNSDQEEEGEEEDGSDQGSGGGGADDKHSPLANGDPLASRRHGDRNRNIGDHNRNL
LNRKMTSASYDTFSSARFGAQCHGDDSEVPRPHEVIPLTRAGGGDFKTTSCLTLSRREVY
L
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atggggagcctgagcgttggcgcagtgaacacgccgctcggctgctacctcgtgctcgtg
ctgcagctgctgactcaggtccattcagcgctgcgctaccgggtggctgaagaaggtccg
gcagatgtgcgcatcggcaacgtggccagcgacctcgggctcgcgacgtccggaattggc
acaggagatgtgacttttgccctggaatctggagcagagtacttcaagatagacaacgtg
acaggtgagctgaccaccagcacccggcgtatagaccgcgagaagttacctcagtgtgcc
atgatctttgacgagaacgagtgcttcttggactttgaagtttccgtgatcgggcctctc
caaagctgggtggatcttttcgaaggccgtgtcgtcgtgaccgacatcaacgataacacg
ccgtcgttcccgtctccgatgcttactctggccgtcgaggaaaacagacccatcggaacg
ctttaccttctcccgacagctacggaccgcgacttcggacgcaacggtatcgaccgctac
gagctcgtgcaccaggatgccatttccgggtcgcgccgacccaatcccagcatggccacc
ggaactgaacggaatggtggtggtgagaggaggcgtgtccaggaggctgggcctacacaa
aatggccggagcaacagtgtctttgagttgcaagttgccgatacacctgatggacagaaa
cagccacagttgattgttaaaggcccactggaccgagagacgcgcgattcctatgagtta
attctcagagtacgagatggtggaaatccaccacgttcgtctcaagcgctgcttcgtatc
tccatcaccgatgttaatgacaacaatccacgcttcgaaaggactgtttatgaagctgaa
atggcagaaaacacacctccaggaacacctgtacttcaggtgcgagcttcagatcgtgat
gttggtgtaaacggacaggtggaatatgtttttggtgccgcaacagaatccgtacgccgg
ttacttcgcctcgacgaggcctcgggttggctcagcgttttgcaccgtatcgaccgagag
gaagtttcccaacttcgctttatagtaactgcaaaagatcgaggccagccacctcgaacg
gaccgtgccacagtgatactcagtgtacgagatgaaaatgacaacgttcctgttattgat
atccgcaaaatcggacgcatccttgtacgagacggcgctgctatggtacccgagaatgtt
ctagtggacactcctgtagctttggtccaagtttcggatcgtgatcaaggagaaaatggt
gctgtgacttgcacggtggtgggggacgtcccatttacgctaaaacctgcaggagaaaat
gcgctggctcctcctccagctggtgatgatgcctttgaacgaaacaaaaagaagttcttc
cttcacacttcggcgcttttggactatgaaactacaagggattacatggtcacgattgtt
gcggtggattctggaagtccgagtttgtccattaacagcactttgatggtgcgagtggtg
gatataaatgatcacgcgccaacattcgctcaaaatctagtagaagttcattttgctgaa
aacaacacaccaggggagcgagtggtcaccatagttgcgtccgatgctgatagcggaaaa
aatgcagaaatcgcatattccctggatccatctgtgaacggtgcgttttacatagacaca
gataatggagatatacgtgcggccggagtgttagatcgagaacaacgtgatagatatgag
ttccgtgtaatagcaagagacaagggtagtccatctttacaaggttctacaacagttgtc
gtccagataacggataggaatgacaatgctccaaagttcgtccaggacgtcttcatgttt
tatgtcaaagagaacttgctttccaacagccccgtgggtatgttgactgttacagatgca
gatgatggggagaatgcggagttgagtttgtttgtggaggaagatgatgatgatgaagag
gaaaatgaagcaggaagtagaaagcaggaaacgttaatcaagacattctctattgagaac
aacaccggaaccatcttttctgcgttgtcgtttgaccgtgagcgccgcagcacgtataaa
tttcgtgttcgggccatagatggaggtgacccgcctcgatctgcgactgccacagtctct
ctctacgtaacggatgaaaatgacaatgctccatctgtcattgccccgtctaacgattcg
tacacattcctcaccccgtccagcagcgctcggactgtcgtgagcaccataaaggccttg
gacagtgatgctgggtccaacgcagacctacgctatgctctgattggtggaaacccattc
catctgttcgagatcggcccaagcaacggtgtcatcacgctgacggaaccattggagaga
cgacaccgaggacttcaccgactggtggtacgagtgaacgacagtggagttccctcactg
tgtgccacggcgctcatccacatcttcgtcaacgagagtctcactaatgccaccctggtg
gacgctcaggtggcacgcagtttgggggtccccctgtccttggacattgcaggcgaccct
gataatgagcggattctgggtaagcagcgtctcagtgtggcgattggcgtgctgtctggt
gcggctgctgtggttctcatcatcctgctggttttgacggcgcgccagtgcggtgcactt
gggaagaatggctatgaggcgggaaagaaagaaccggaggaggacttcttcacgcccnnc
gtccaccctcccagccgccgcctgagaaaaaaaaaacgtcgcgacgcagagaaacgtgac
gtccggtccaaatctgagcgatcgctgtatgccggaatcgtcacagtgaacagctgcaga
cgtaccgatgaggaagaagaagaggaagaagaagtagaggaggaacaggaagtaagtcag
cgcatcggagctaggcgtcaccgctccagtcctgacctggctcgtcattacaaatcgagc
tctccattacctgccgtccatctgcagcccaactcgccgccggtggaggggaagaagcac
caggccgtgcaggaacttcctcccacaaacaccttcaccgggaatgggaacgggaacgct
gacgccatgtcgctcagctctgaccattgctctgactacagttgccacaacaacaaatac
agcaaacagccattgcgcagggtgacattctctgtggcgacagatactggttgctatgac
agtggggtggacgagtcggagacaccgagcagtaagagcagtaagatcggtgtcctgtct
cttcctgaagatggctatgagagaacaacacctgagggcagtgtgggggaggaggagcac
gtggagaacgactcaaggcagctccccgatgtggcattaacgggaaaatgcactcgtgat
tgtggtgagtatggccactctgacacctgttggatgcctgtgcagtcatcaccacggaga
ctccaaggcaatggagcaccacggcaacgcttgtccagcttcacatcagcaggtgatgac
aataacaatcacgacaacagcgatcaagaggaagaaggagaggaggaggatggctcggac
caaggcagcggaggaggtggagccgatgacaaacacagtcctctggctaatggtgatccg
ctcgcaagccgtcgccatggtgaccgcaacaggaacatcggggatcacaatcggaacctg
ttgaaccgcaagatgacatcggcatcctatgacacctttagcagcgctagatttggagct
cagtgccatggtgatgactcagaggtaccccgtccacatgaggttattccactgacccgg
gcagggggaggagacttcaaaacaacatcatgcctgacactatcacgcagggaagtttat
ctgtga
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