Neoarius graeffei (lesser salmon catfish): 132883540
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Entry
132883540 CDS
T10798
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra02010
ABC transporters
ngra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
132883540 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
132883540 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ngra02000
]
132883540 (abca1a)
Transporters [BR:
ngra02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
132883540 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_22
AAA_23
Motif
Other DBs
NCBI-GeneID:
132883540
NCBI-ProteinID:
XP_060773250
LinkDB
All DBs
Position
3:complement(73038561..73069464)
Genome browser
AA seq
2267 aa
AA seq
DB search
MAVCTQLGLLLWKNFTYRRRQTIQLLIEIVWPLFIFFILISVRLHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGESPGVVGNFNDSIISRLLTDAKKILIYSQNDK
SFEGYKELVRALRKLQNNTAGFKLKDFLRDNETLSEFLEQNTTLSKHAVQQIVEANINLE
KVLIKGFGVHLRDLCNTTSLEEFVSIADHNVSEMTQKIICQSPADWLNGAESHFLSNLDF
LKPIRNDVRSNPKLVQDVSLATDTLLKSLGSLAVELVSMKSWRDMRNEILYLTGNITHSP
NHVYQAVSRIVCGHPEGGGLKIKSLNWYEDHNYKALFGNHNDSDSEPISIYDNTSTPYCN
NMMRNLESSPISRMIWRALKPLLMGKILYTPDTPATRKIIHEVNKTFQELGVLRDLGGMW
EELRLKVWDFMENSEEVDFVRTLLQNNASAQFFNTRLKDTDWRVEDISRFLSKASEDTRP
PGTGYTWRDVFNETDQAILTISRFMECVNLDKLEPVSTEERLVNQSMRLLNNRKFWAGIV
FPDMQSDSSKLPSNVSYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSYLQ
DVIEHGIIRALTGSKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAIIIK
GIVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKLGNLLPYSDPGV
VYLFLVSFAIVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAKV
VVSLLSPVAFGFGCEYFALFEEQGVGIQWDNLLSSPMLEDNYSLTTSISLMLIDAVLYAV
MTWYIETVFPGQYGIPRPWYFPFTKSYWCGEKCGWTTASSTNKKENAEAVCIEEVPADLE
PGVYIENLVKVYRHGNKLAVDDLTLGFYEDQITSFLGHNGAGKTTTMSILTGLFPPTSGT
AYIMGKDIRSDLSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKSEMDQIV
SDLGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK
YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFDL
SLSSCRNSSSTVSYSKNSLKKDDSISESSSGLGSDHESETTTIDISLISNVIFKHVPSAR
LVEDLGHEITYVLPYKAAKDGAFVELFHEIDDRLIDLGISSYGISDTTLEEIFLKVADDN
GVDAVTSDGTVLPRRHRRHAFGDHQSCLKPFTEDDSFDFNDSEGDPESRETDWLGVSDGK
GSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKY
PSLELDPSMYEEQYTFISNDAPENTHSNKLLGALTDNPAYSGRCSEDGTPGDGSCPVRES
EWIVPEIPKTVSDMFQTENWSMENPSPVCECSCEEKKKMLPECPPGAGGLPPPQLKVSST
DTLQNLTGRNISDYLVKTYAQIIGKSLKNKLWVNEFRYGGFSLGAKSSQDLPPSDEISKA
IAHMRARFSLERGTAADRFLRSLSSFIGGLDTKNNVKIWFNNKGWHSIAAFLNVMNNGIL
RASLPTGLNPAKFAIRAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVV
FLIQERVNKAKHMQFISGVQPFLYWLANFVWDMCNYIVPATLVIIIFICFQQEAYVSSTN
LPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGSN
EIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFHSPLAWDMVGKNLF
AMAVEGVVFFCITVLIQYRFCIKARGISARLKPITEEDEDVARERQRILGGGGQSDILEL
RQLTKVYKRKQKPAVDRLCVGIPRGECFGLLGVNGAGKTSTFKMLTGDSVITSGEAYLAG
KSVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRKLGL
VKYVDKSAGSYSGGNMRKLSTAIALIGGPPMVFLDEPTTGMDPKARRALWNCILSIIKEG
RSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGSEPHLEP
VMELIERELPGSILKEKHRNMLQYQLPSSLSSLARIFSILSKNKEQLHIEDYSVSQTTLD
QVFVNFAKDQSDEDHIKDISVNKSDAVVDFSQLDTFLMDAKAQETVV
NT seq
6804 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctgcactcagctgggtttgctgctgtggaagaacttcacctaccgacggaga
cagaccattcagctactgattgagatcgtgtggcctctcttcatctttttcattttaata
tctgtgcgactccactatcctccgtatgaacagcatgaatgccactttcccaacaaggcc
atgccatcagcgggcactttgccctgggtacagggaatcatctgcaatgccaacaacccc
tgcttccggtacccaactcctggagagagtcctggtgttgtgggcaactttaatgactcg
ataatctcccggctgctcactgacgccaagaaaatccttatctacagccaaaacgataag
agttttgaagggtacaaggaactcgtccgagctctcaggaaactccagaacaacactgca
ggttttaagttgaaggacttcctccgtgataatgaaaccctgtctgagttcctggagcag
aacacaacactgagtaaacatgccgtgcagcagatagtggaagccaacatcaacctggaa
aaagtgctgattaaaggtttcggagtgcacctgagagatctgtgcaacacaacgtcactg
gaagagtttgtaagcatcgctgatcacaacgtctccgagatgacgcagaaaatcatctgt
cagtcgcctgctgattggctgaacggtgcagagagccacttcctgtccaaccttgacttc
ctgaaacccatccggaacgatgtcagatccaaccctaaactcgtccaggatgtgtctctg
gccactgatactctcctgaagagtctgggatcgttggctgttgagctggtgagcatgaag
agctggcgtgacatgcggaacgagatcctgtacctgaccggaaacatcacgcactcgccc
aatcatgtgtaccaagccgtgtcacgcattgtgtgtggacacccagaaggtggcggtctg
aagatcaaatccctcaactggtacgaagatcacaactacaaggccctattcgggaaccat
aacgacagtgacagcgagcccatatccatctatgacaacacatccactccatactgtaac
aacatgatgaggaatttggagtcgagtccgatctctcggatgatctggagagcgctgaag
cctctgctcatggggaagatcttatacacacctgatacaccggccacacgcaagattatc
cacgaggtgaataagacgttccaggagcttggtgtactgcgggatttgggaggaatgtgg
gaggagctgaggttgaaagtctgggacttcatggagaacagtgaggaagtggattttgtg
agaactctgctccagaataacgccagtgctcagttcttcaacaccaggctgaaagacaca
gactggagagtggaggacatttcccggttcttgtctaaagcctccgaggacacgcgcccc
ccaggtacaggatacacctggagagacgtgtttaacgagacggaccaagccattctaacc
atctcacgtttcatggagtgtgtgaacttggacaagttggagccggtgtcaactgaggag
cgcctggtgaatcagtccatgcgactgctgaacaatcgcaagttctgggctgggatcgtg
tttccagacatgcagtctgactcctccaagcttccttccaatgtcagctacaagattcgc
atggacattgacaacgtggagcgtaccaataagatcaaggatgggtattgggaccctggt
cctcgtgctgacccgtttgaggatctgcgctacatctggggaggattttcatacctccag
gatgttattgaacacgggattatccgggctttgacaggcagcaaggaaaaaactggagtt
tacatccagcagatgccgtatccgtgttacgtggatgatattttcttgcgtattatgagc
cgctcgatgccgctgttcatgaccctcgcctggatgtactcagtggccatcattattaaa
ggcatcgtgtatgagaaagaggcacgtctaaaggagaccatgaggattatgggattggat
aatgggatcttgtggctgagctggttcattagcagcctgatcccgctgctcatcagcgcc
gccctgctggtcctcatcctgaagttggggaaccttctgccctacagtgacccgggtgtg
gtctatctcttcctggtctccttcgccattgtcaccatcatgcagtgtttcctgatcagc
acgctgttctcccgggccaacctggcagctgcctgtgggggcatcatctacttcaccctg
tacctgccctatgtcctgtgtgtggcctggcaggactatgtcggcttcggggctaaagtg
gttgtgagcctgttgtctccggtggcattcggttttggctgtgagtactttgcactgttt
gaggagcagggagtgggaattcagtgggataacctgctgtccagccccatgctggaggac
aactacagcctcactacctccatctcgctcatgctaatagatgctgtgctgtatgcagtc
atgacatggtacattgagactgtcttcccaggtcaatatggcattccccggccatggtat
ttcccctttaccaaatcttactggtgtggagagaaatgcggctggactacagcttcctct
accaacaagaaagaaaacgcggaagcggtgtgcatcgaggaggtaccagctgatctggaa
cctggtgtctacattgagaatctggtgaaggtgtacagacacggcaacaagctggcagtg
gatgacctcacgctgggcttctacgaggatcagatcacctccttcctgggtcacaatgga
gcaggaaagaccaccaccatgtccattctgactggcctgtttcctcccacgtctggcacc
gcttacattatgggcaaagacatccgttcagatctaagcgccatccgtcagaacctggga
gtttgtccgcagcacaacgtcctattcagcatgttgacggtagaagaacacatctggttc
tatgctcgcctgaagggcctatcagaggagaaggtgaagtctgagatggatcagattgtt
tcagatttaggcctccctcacaaacgcaaatctcgtactagtcagctttcaggaggaatg
caaaggaaactctctgttgctttggcatttgttggaggttcaaaggttgtgatcctggat
gaacccacagctggtgttgatccatacgctcgcaggggcatctgggacctactgctcaag
tatcgtcagggtcgaaccatcatcctctccacccaccacatggacgaggctgacattttg
ggtgaccgcatagccatcatctctcatgggaagctgtgttgtgtgggatcttccctcttc
ctgaagactcagcttggcactggatactacctaacactggtcaagcgggatttcgacctg
tctctgagctcatgtcgcaactccagcagcaccgtgtcctattccaagaatagtctcaag
aaggatgacagtatctcagaaagcagctctggccttggaagtgaccatgaaagtgaaact
accaccattgacatctccctgatctccaatgtcatcttcaagcatgttccctcagccaga
ctggtggaggatctgggccatgagatcacctatgtgctgccttataaagcagcgaaggat
ggtgcctttgtggaactcttccatgagattgacgatcgtctcatcgacctcggtatctcc
agctatggaatttcagacaccacgctcgaggagatcttcctcaaagttgccgatgataac
ggagttgatgctgttacctcggatggcacagttcttccaagaaggcaccgccggcacgca
tttggtgaccatcagagctgtctgaaacccttcacagaggatgacagttttgatttcaat
gattcagaaggtgatccagaatcgcgtgagacggattggttaggagtgtctgatggaaaa
ggctcatatcaggtcaaaggttggagtctgaagaggcagcagtttgtggctttgctctgg
aaacgtttcttgtatgcccgtcgctctcggaaaggattctttgctcagattgttcttcca
gctgtgttcgtgtgcattgccctggtcttcagtctgatcgtgccacctttcggaaagtac
ccaagcctagagctggaccccagcatgtatgaggagcagtacaccttcattagtaatgat
gcaccagagaatacgcacagtaacaagctactcggagcgttaacagacaatccggcctac
agtgggcggtgttcagaggatgggacgcctggagatgggtcatgcccagttagagaaagt
gaatggattgttcccgagattcccaaaaccgtatcggacatgtttcagactgaaaactgg
agcatggagaacccatctcctgtctgtgaatgcagctgtgaggagaagaagaagatgttg
ccggagtgtccaccaggagcaggcggcctgccaccaccgcagctcaaagtgagcagcaca
gacacactgcagaatctcacagggaggaatatttcggactacttggtgaaaacgtatgca
cagataattggaaagagtttgaagaacaaactgtgggtgaatgagttcagatacggtgga
ttctcattgggtgctaaaagttcacaagacctgcccccttcagatgagatctccaaggct
attgctcatatgcgtgctcgtttcagcttggaaagaggtactgcagcagacagatttctg
aggagtttatcgagcttcatcggtggtctggacaccaagaacaatgtcaagatctggttc
aataacaaaggctggcacagcatcgctgctttcctcaacgtgatgaacaacggtatcctg
cgtgccagcctgcccactggtctaaaccctgcaaaatttgcgatcagagcttttaaccac
ccgctgaacctcactaaagagcagctgtctcaggtggccctgatgaccacctcagttgat
gttctggtctccatctgcgtcatcttcgccatgtcctttgtcccggccagctttgtggtc
ttcctcattcaggagagagtgaataaagccaagcacatgcagttcatcagcggagttcag
cctttcctctactggctcgcaaactttgtgtgggatatgtgtaactacatcgtccctgca
accctcgtcatcatcatcttcatctgcttccagcaggaggcctatgtctcctccaccaac
ctgcctgtccttgctctccttttactcctttatggctggtccataactcctctgatgtac
ccagcatcgttcttctttaagatccccagcacagcctatgtggtcctaaccagcgtcaac
atcctcattggaatcaacggcagcgtgtccaccttcgtcctggagctttttggtagcaat
gagattggtggcatcaatgatattttgaaaaacgtcttcctgatcttccctcacttttgc
ctgggacgtggactgatcgatatggtgaagaaccaggccatggctgatgctctggagaga
tttggtgagaatcggttccattctcctctggcatgggatatggtggggaagaacctcttt
gctatggcggtggaaggcgtggtcttcttctgtattacagtgctcatacagtatcgcttc
tgcatcaaggccagaggcattagtgctcgtctgaagccgatcaccgaggaagacgaggac
gtggccagggagaggcaaaggatcctgggtggaggtggacagagcgacatcctggagctc
agacagctgaccaaggtgtataagaggaagcaaaagccagcggtggacagactgtgtgtg
ggaattccacgtggagagtgttttggattgcttggtgtgaatggtgctggaaaaacgagt
accttcaagatgctcactggagattcagtcatcacaagcggagaggcttatttagctggc
aagagcgtgctgacggagatcaacgaggtgcatcagaacatgggctactgtcctcaattt
gacgccatcaacgacctgctgactggccgagagcacctggagttttacgctattctgcgt
ggagtgccggaaaaagaagtgtgtgaggtggcagagtggggaatccgtaaactgggtctg
gtgaaatatgtggacaaatcagcaggaagttacagcggaggaaacatgcgcaaactctcc
acggccatcgctttgattggaggcccacccatggtgttcctggacgaacccacaactgga
atggatcccaaagcacgacgcgctctctggaactgcatcctcagcataattaaagaggga
cgttctgttgttctcacctcacacagcatggaggagtgtgaggctctgtgcactcgcatg
gccatcatggtcaatggcaggttccgttgcctgggcagtgttcagcatctaaagaacagg
tttggtgatggctacacaatcatcttgcgtgtggcaggttctgagcctcacctggagccg
gtgatggagctgatcgagcgtgagttacctggcagcatcctgaaggagaaacacaggaac
atgctgcagtaccagcttccatcatcactctcctcattggctcggatcttcagcattcta
tccaagaacaaagagcagctccacattgaggactactccgtctcacagaccacactagac
caagtatttgtcaattttgccaaggaccaaagtgatgaggaccacatcaaagacatttcc
gtaaacaagagcgatgccgtggtggacttttcacaactagatactttcctcatggacgct
aaagcgcaggagactgtggtgtga
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integrated database retrieval system
