Neoarius graeffei (lesser salmon catfish): 132883891
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Entry
132883891 CDS
T10798
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132883891 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngra03000
]
132883891 (arid1b)
03021 Transcription machinery [BR:
ngra03021
]
132883891 (arid1b)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132883891 (arid1b)
Transcription factors [BR:
ngra03000
]
Eukaryotic type
Helix-turn-helix
ARID
132883891 (arid1b)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132883891 (arid1b)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132883891 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
132883891
NCBI-ProteinID:
XP_060773970
LinkDB
All DBs
Position
3:complement(118209744..118333028)
Genome browser
AA seq
2068 aa
AA seq
DB search
MGSRYDSSKIGPTSNDSSSSSSGAGSEPCRSGNGSGCEFNHYYGDGRRGGPCFDQHGGQQ
SPGAVTHSARNNMDQMQNSHEEYHNNPYNHYPNYRPGYGGAGYGLMSPSRQGNAMGPGSN
SATAAAAAHGKAAMASPSAPAPAANVGGFQRFPPGQNQQQHPSGATPTLNQLLTSPSPMM
RGYGSGYQDYNNNPSAQQQQAGMGLGKDLSAPFGSASHSWGAQQRSHPAMSPGNNSQGNN
RSQVAPIDAMAMKRSQLYSMANSPYSQQQQQQQPGGAYSGQPYGAPAPHRYPMGMQGRGQ
VGLGAMQYHHQQQVPAQYGQQGMGGYCQQGQPPYFSPPHQQPAAPSQPHYMQPRAPPQQD
APQEAYGSRAQPAMTPGKPNHDEMGLNQQERPSSLPDLSGSIDDLPTGTEAALSSAVSAS
GSTSSQGEQSNTAQSPFSPHASPRLSGLRSGPSPSPVGSPVGSSQSRSGPISPASVPGTQ
MAPQTPGNVSDGASHSTLSQSPMSQERGFASNLQRSGPGPQFGSQQPGPPMSPHPSPGGP
MHHSVGSYQQGGPGYGPQGGQYGPSGNYPRPPSYGGAPGPSYSGPGPGMSLSMNASSPMH
GQGPGQPCGSMPAARGPAQPGGGRPYPAGSSSAAPTSPSMPQSAGPGMGPPPPTGGRKPH
ESGTAPSPQNPHAPGPARPPYTRSPVYPGVRPNPFTPPHFPQPHTGLYTSGPGQPQPEHY
GSGGYPGGPLMGGMGPGGPYNPPQSANSSRMNLQGPPYSNMPSGPMPGDGMPPTEPKLRA
EKEEGSVAGNEPPKSKDSSSSHCVSQPPTPSPLSPSPASLSSNHGDDSDSISSPAWPKTP
SSPKPNPATMTNEKITRLYEMGSEPERRAWVDRYLAFMEERGTPVPNLPAVGKKPLDLCR
LYLCVRDIGGLAMVNKNKKWRELSTHLNVGTSSSSASSLKKQYIQYLFAYECKVERGEEP
PPDAFNTDGKKQQQQAKIQPPSPANSGSLQGPQTPQSTGSSSMTEMPGDLKPPTPASTPH
SHMPPQQSARNSGVSVQDPFSDSSDPAFQKRANIPPGMMYQQGGGGIDARMQYDANKEPY
GGQRKGGNDSFMPGPMPSSGMQDMYPRGPQAMGMRPQYPYSQGFDRRPDHAMGPDGGMVP
PGNQNNMMPSNSDPNMYPGNRYPSHQRHGHDGYGQQYPQGMPYSAHGMYPQPQGYKRPGE
GMYGPPAKRHEGDSYGMQFSGQQPDMYSQYGGYPERRPMQGQFPYPYNRERMQHGGQGPP
QHGMMGGGQSSTPTGGPQGNVWHPRNDMGYPYPSRQGHGPPYPSMSRADDPEGRANQDSQ
WPSHPGQRQSPYPPQSSASSMPPMANRQPPSSYQSPPAMPNHIARAPSPAPFPRPMGGSM
SPNKAHLMQSMKMPKPGVPGSMPSSQSGGVPSQGFPPIHREISFPLDSVEATQPRLKPRR
RLTSKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNTVSSFTLSQLPGFLELIV
EYFRRCLIEIFGILEEYEVGTEGQKTLLGPLPEPAEKEELKHQVQDSHSDTELVDKKPEA
ESQMCPPSSTSGTEPLEKKPAETAEQEKDGQNEADKEEDCPSTEHRPKQASKYDRLPVKV
EEREAIADLVEDRSEQLGLSGEFTSGLLHWKAGGGDSTAHIQTHFDRKYEETGTKPALTM
GLEEVKEQDTADPSPDKQNQDVTDKSPTATAEGTGSLPESEPQQSTSQSQNNHRSIALLE
DEPRCWDEAPLSTAEDWQDELAKRCVCISNIVRGLSFVPGNDADMARHPGLVLILGRLVL
LHHEHPKRKRTPPTYQREEERSLACSKDEWWWDCLGALHENTLVTLANISGQLDLSVYPE
SICLPILDGLLHWMICPSAEAQDPFCTASGFSSLTPQRLVLECLCKLSIQDCNVDLLLAT
PPFSRQERLFATLVRHVGERKSQVCREMAVAVLANLAQGDPTAARAIALQKGSVGTLISF
LEDSLAMAQYQQSPHSLLHAGHPTHPEPPSINMMCRAAKALMAIAQVEENRPEFVLYESR
LLDITLSSVLNSSVAAILCEVLFKLGRS
NT seq
6207 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcaggtacgactcgtctaaaatcggaccgacgagtaacgacagcagcagcagc
agcagcggtgccgggagcgagccgtgtcggagtgggaacggctcgggctgtgagtttaat
cattattatggggatggaagaagaggagggccttgctttgatcaacatggcggacaacaa
agccctggtgctgtaacgcattcggcacggaacaacatggatcaaatgcaaaactcgcac
gaagagtaccacaataatccgtataaccactatccgaactaccgacccggttacggtggg
gctggatatgggctgatgagcccgtcgcggcagggaaacgccatgggcccgggcagcaac
tccgctacagccgccgccgccgctcacggtaaagctgccatggcttctccttctgccccg
gctcctgctgcaaacgtcggcggctttcagaggtttcccccaggccagaaccagcagcag
cacccgtcaggcgccacaccgactttaaaccagctcctgacctctccgagcccgatgatg
cgcggctatggaagcggctaccaagattacaataacaatccgtcggctcagcagcagcag
gcgggcatggggctcggcaaagacctcagcgccccgttcggctccgcgagccacagctgg
ggggcacaacaaaggagccacccggctatgagccctggaaataacagccaaggaaacaac
agatcccaggtggcacctatagacgccatggccatgaagcgctcccagctttacagcatg
gcgaacagcccgtattcgcagcagcagcagcagcagcagccgggtggagcctactccggt
cagccatatggagctccagctccacacagatatccaatgggaatgcaggggcgtggccaa
gttggtctgggagctatgcagtaccatcatcaacagcaggtcccggcgcagtacggacag
cagggcatgggtgggtactgccagcagggtcagcctccatacttcagccctcctcatcag
cagcctgccgcgccctctcagcctcactacatgcagccacgagctccaccgcagcaggac
gctcctcaggaggcgtacggcagccgagcccagcccgctatgactcccgggaagcccaac
cacgatgagatgggcctgaaccagcaagagcgaccctccagccttccggacctgtcaggc
tccatcgatgacctcccgacggggacggaggcagcactgagctcggccgtcagcgcctcg
ggttccaccagcagccagggcgagcagagcaacacggcgcagtccccgttctcccctcac
gcgtcgccccgtctctctggcctgcgcagcggaccctcgccttctccagtcggctcaccc
gtgggctccagccaatcacgatccggacccatatctcctgccagcgtcccaggtacacaa
atggccccgcaaaccccagggaatgtatcagacggggcctcccattccaccctcagtcag
tcgcccatgtctcaggagagaggatttgcctctaacctgcagcgcagtggccccggccct
cagtttggctcccagcagcctggaccccccatgtcccctcacccgtccccaggaggcccc
atgcaccacagtgtgggctcgtaccagcagggcggccccggatacgggccccagggcggg
cagtacggcccttcaggtaactaccctcgtccacccagctacggcggcgctccaggcccc
agctacagcggccccggtcctggcatgagcctgagcatgaacgccagcagccccatgcac
gggcagggccccggacagccctgtggctcgatgcctgccgctcggggtcccgctcagcca
gggggaggacgtccgtacccagcaggctctagcagcgcagcacccacatctcccagcatg
cctcagtctgcagggcccggcatgggcccccctccacccacaggcggccggaaaccccac
gagagtggcactgctccatcaccgcagaacccgcacgcacctggaccggccaggcctcca
tacaccaggtcccctgtgtacccgggggtacggccgaacccctttacccccccacatttc
cctcagccccataccggcctctacaccagcggcccaggccagcctcagcccgagcattat
gggtcaggtgggtacccaggtgggcccctgatgggtgggatgggtcccggaggcccctac
aacccaccacagagcgctaactccagcaggatgaacctccagggtcctccgtacagcaac
atgccctcaggtcccatgcctggagatggcatgcctcccactgagccgaaactgagagca
gagaaggaggaaggcagtgtggctggcaacgaaccgcccaaatcaaaggacagctccagc
tcccactgtgtgtctcagccccccaccccgtctcccctgtcccccagccctgctagtctg
tcctctaatcacggcgatgacagtgacagcattagcagtccagcctggccaaagaccccc
agcagccctaagccgaacccagccaccatgacgaacgagaagatcacacgcctgtatgag
atggggagtgagccggagaggagggcctgggtggaccgttacctggccttcatggaggag
aggggcacacctgtacccaacctacccgccgtagggaagaagcccctggacctgtgccgc
ctctacctgtgtgtgcgggacatcggaggcctggccatggtgaataagaataagaagtgg
cgcgagctctccactcatctgaacgtgggaacatcgagcagctccgcgagctctctgaag
aagcagtacatccagtacctgttcgcttatgagtgtaaagtggagcggggtgaagaacct
ccaccagacgccttcaacactgacggcaagaagcagcagcagcaggccaagatccagccg
ccatcaccagcgaactccggctctctccagggccctcagactcctcagtcgacaggcagc
agctccatgaccgagatgcccggggatttaaagccgccgactccggcctctactccacac
agccacatgccccctcagcaaagtgccagaaacagtggtgtcagtgtacaggatccgttt
tctgatagcagcgatccagctttccaaaagcgagccaacatccctcctggtatgatgtac
cagcagggaggagggggcatcgatgcccgaatgcagtatgatgccaacaaggagccctac
ggaggtcaaaggaaaggtggcaatgactctttcatgccagggccaatgcccagcagtggc
atgcaggatatgtacccacgaggaccccaggccatgggcatgagaccccagtacccttac
agccaaggctttgacagaaggcctgaccatgccatgggccccgatggtggaatggtgcct
cctggaaatcagaacaacatgatgccttccaacagcgatccaaacatgtacccaggaaat
agatacccatcacatcagaggcacggccatgacggttacggacagcagtatcctcaaggc
atgccgtacagtgcacatggaatgtacccacagccacagggctataagagacctggggaa
gggatgtacggccccccagcaaagcgacacgagggcgattcctatggtatgcagttcagt
ggccagcagccggatatgtacagccagtacggtggatacccggagcgcagacctatgcag
gggcagttcccgtacccatataaccgtgaacgcatgcagcatgggggacagggacctcct
cagcatggcatgatgggtggaggacagtcctccactcccaccggggggcctcagggtaat
gtatggcaccctaggaatgatatgggctacccttatcctagcagacagggtcacgggcct
ccatacccttcaatgagccgtgcagatgacccagagggcagggcaaatcaggacagtcag
tggccgagtcacccgggccaacgtcagtcgccttatcctccccagtcttctgctagctcc
atgccgcccatggcaaaccgccagcctccgtcctcttaccagtcccctccagccatgccc
aaccacattgcccgtgctccgagtccagcaccatttcccagacccatgggaggttccatg
tcccccaataaagctcatttgatgcagtctatgaagatgccaaaaccaggggttcccggg
tctatgccaagctctcagagtggtggtgtccccagtcaaggcttcccacccatacaccga
gagatcagctttccactggattctgttgaggctacacagcctcggttaaagcctcgccga
aggttaacctccaaagacattgggacaccagaggcctggcgtgtgatgatgtctctcaag
tctggtttgctagcagagagcacctgggctttggacactataaacattctactatatgac
gataatacagtgtcctcttttaccttgtcgcagttgccaggtttcctggaacttatagtt
gaatatttcagaagatgcttgattgagatcttcggaatcctcgaggagtatgaagtgggt
actgagggccagaagacacttcttggccccctcccagagccagcagaaaaagaggaattg
aagcatcaggtgcaggacagtcattcagatactgagctggtggacaagaagcctgaagca
gagtctcaaatgtgtcccccaagcagcacatctggaacagaacccctggagaagaagcca
gcagagacagctgagcaggagaaggatggacaaaacgaagcagataaagaagaagattgt
ccttccacagaacacaggcccaagcaagcaagcaagtatgaccgattgcccgtgaaggtg
gaggagagggaggcaattgcagacttggtggaagaccgatcagaacagctgggcttgtct
ggagagttcaccagcggcctgctgcactggaaggctggcggaggagactccaccgcccac
atccagacccactttgatagaaaatatgaggaaacaggaactaaaccagcactgactatg
ggccttgaggaggtgaaagaacaagacactgcagatcccagtccagacaagcaaaaccaa
gatgtcacagataagagtccgacggccactgcagagggtacgggatctctacccgaaagt
gagccgcagcagtccacctcgcaaagccaaaacaaccaccgcagtatcgccctgctggaa
gatgaaccacgttgctgggacgaggcaccgctgtccacagccgaggactggcaggacgag
ctggctaaacgctgcgtgtgcatctccaacatagtccgtggactctcctttgtgccgggt
aatgatgctgacatggcacggcatccaggtctagtacttatactgggcaggctggtgctc
ttgcaccatgagcacccaaagaggaagcggacacctccgacctaccagcgtgaagaggag
cgaagtctggcttgtagcaaggatgagtggtggtgggactgccttggtgccttgcatgag
aacaccttggtgaccttggccaacatttcagggcagcttgatctgtcggtctaccctgag
agcatctgcttacccatactggacgggcttttgcactggatgatttgtccatcagccgag
gcccaggaccctttctgcacggcgagcggtttctcttctctcacgccgcagaggctggtg
ctggagtgcttgtgcaagctgagcatccaggactgtaacgtggacctgctgttagcgaca
ccaccgttcagtcgtcaggaacgcctctttgcgacgttggtgcgtcacgtgggcgagcgt
aaaagccaggtttgccgggagatggccgtggccgtcctcgccaacttggcacagggcgat
cccacggcagcccgggccattgcacttcagaagggcagcgtcgggaccctgataagcttt
ttagaggacagtctcgccatggcacagtatcagcagagccctcatagcctgctacatgcg
ggacatccgacccacccagagccacctagcatcaacatgatgtgccgggctgctaaagct
ttaatggcgattgctcaggttgaggagaaccggcccgagttcgtgttgtacgagagccgc
ctgctggacatcacgctgtcgtctgtgctgaactctagtgtggcagccattttgtgcgag
gtgctgtttaagctgggacgctcgtga
DBGET
integrated database retrieval system
