Neoarius graeffei (lesser salmon catfish): 132884484
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Entry
132884484 CDS
T10798
Symbol
smx5
Name
(RefSeq) smx5
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03018
RNA degradation
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132884484 (smx5)
09123 Folding, sorting and degradation
03018 RNA degradation
132884484 (smx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132884484 (smx5)
03041 Spliceosome [BR:
ngra03041
]
132884484 (smx5)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132884484 (smx5)
mRNA degradation factors
5'-3' decay
Lsm complex
132884484 (smx5)
Spliceosome [BR:
ngra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
132884484 (smx5)
Complex C
U2 snRNP components
132884484 (smx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
132884484
NCBI-ProteinID:
XP_060774319
LinkDB
All DBs
Position
4:80629228..80636421
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttttactcgttcttcaagtccttggtgggtaaagatgtggtggtggagttaaaa
aatgacttgagcatatgtggaaccctacactcggtagatcagtatctgaacatcaaactc
accgatatcagtgtcaccgaccctgaaaagtatcctcacatgttgtcagtgaagaactgc
tttatccggggatcagtggtgcggtatgttcagctcccggccgacgaggtggacacacag
ctattacaggatgcagcacgcaaagaagccatgcaacagaaacaatga
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