Neoarius graeffei (lesser salmon catfish): 132884809
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Entry
132884809 CDS
T10798
Symbol
tnr
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
ngra04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132884809 (tnr)
04518 Integrin signaling
132884809 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132884809 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132884809 (tnr)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132884809 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_3rd
EGF_Tenascin
EGF_2
Fn3_Dep-1_2nd
Fn3_VIN3
FN3_Tor_3rd
Interfer-bind
DUF4998
DUF7949
Actin
Motif
Other DBs
NCBI-GeneID:
132884809
NCBI-ProteinID:
XP_060774771
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Position
1:complement(33471631..33641265)
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AA seq
1345 aa
AA seq
DB search
MVFGSIMALYSLMSLALLFLSVNAVTAHKNKRVWTARIKRQATDGSGNTNNQSQPMIFNH
VYNINVPLESLCSVDLGSKGSKGSDKSDEEYEEQSMDLDSQVTFTHRINIPKTVCSCPAS
AMLQQLVSRIEMLEREVSLLRAQCSGACCGENLVLGRLDFGPHCSGHGTFNMDVCGCVCD
EGWMGKNCSEPQCLGNCSGQGVCVEGVCVCDTDFSGENCSEPRCPGDCSGQGVCIDGECV
CEEAYSGDDCSMNRCLNDCSEQGFCVNGTCQCRLGFLGEDCSRISCANNCSHKGECKDGF
CVCQAGYMGDECASVAPPTNLQVRGVMERTIDIDWEGSSVVTDYLITYVPTSPGGVQLEL
RVQGNVTRTTISKLEPGLEYKINVYTVIDDVISVPVTTVVSTYLSNPDGLFFKSIMETSV
EVQWQPFDYLFDGWEISFIPKGNDGGMTTQLPSTITSYHQTGLRPGEEYTVNLVALKDQG
RSQPVTATVTTLIDGPTQLIIRDVSDTVAFVEWTLPKAKVDEIILRYGIVGYDGPKTTFH
LDPTLSQYSLQVLRPGSRYEVLVSSFHKGNESRIISAEFVTEIDPPKHLRVLSKTSTSLE
LEWDNSKAAVKYYCVVYSTLAGDQYNKIIIPSSNGTTTKTTLTNLQPGTEYGIGISAILG
TNQSNPATMNARTGLDIPMDLMVTASTENSITLLWGLVQGPVENYRVSYTSASGVTTEIT
VPRDINSTTLSGLEPGTEYTITVMAQRGRQQSAAATIDAFTGFRPVSQLYFSDITAHSLV
VAWSAPAPPADSFKLQYSTDDFTEEVEVVLDGSKTRTVLSGLLPSRKYVVTLVTMHGDTA
SEPVTGNILTGMDPPREIMVSYISEDSVTVSWAKPLAHFDYYKMSYQSARAQVDSVVINK
DVTNYTLTRLHPATEYEIKLNTVRGSQESKVISTSVFTAMDMPMELMALNVTPQGALLRW
TPPRSNVDNYVLTLTRSQVTADTFLVEGNKQEYQLSQLLPSTPYSIALYATKGPLTSGTV
ITSFITPMDAPQNLTASEVNHRSALISWQPPIADIDNYMLTYKSADGSRKELILDAEDTW
IRLEGLAETTEYTVRLQAARGLETSAIVSTSFTTGNRLFAVPQNCAQHLLNGELLSGVYT
VYINRDLSQGVQVYCDMTTDGGGWIVFQRRQNGLTDFSRKWSEYRAGFGNLEDEFWLGLE
NIHKITAQGRSELRIDMRNGHEAVYANYDRFSIGDSRSLYKLRIGEYNGTAGDSLSYHHG
RPFSTKDKDNDNAVTNCALSYKGAWWYKNCHRVNLNGKYGESRHSQGINWHMWKGHEFSI
PFVEMKMRPYNYRSISGKRRRSTLH
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgggtccataatggcattgtattctctgatgagcctggcattgctgttcctc
agtgttaatgctgtgacagcacacaagaacaaaagagtatggacagcaaggatcaaacgg
caagccacagatggtagtggcaacaccaacaatcagagccaacccatgatcttcaaccat
gtgtacaacattaatgttccactagagtccctgtgctcagtggatctgggatcaaaggga
tccaaagggagtgataaatctgatgaggagtatgaggagcaatcaatggacttggacagc
caggtgactttcacccaccgcatcaacatccccaagacagtgtgttcatgcccagcttca
gccatgctacagcagctagtcagtcgcatagaaatgctggagagagaagtttcactgctc
agggcacagtgtagcggtgcttgctgtggagagaacttagtcctgggccggctggatttt
ggccctcactgcagtggtcatggcaccttcaacatggatgtttgtggctgtgtgtgtgat
gaaggctggatggggaagaactgctcagagccacaatgtctggggaactgctctggccag
ggtgtgtgtgtagaaggcgtgtgtgtgtgtgacactgacttcagtggagaaaactgctca
gagcctagatgccctggtgactgctcaggccaaggtgtatgtattgatggagaatgtgtg
tgtgaggaggcctactccggagatgattgctccatgaacagatgtctgaatgactgttct
gaacaggggttctgtgtcaatggaacttgccagtgcaggctgggattcttaggtgaagat
tgctcacgtatctcctgcgctaacaactgcagccataagggagaatgtaaggatggattc
tgtgtgtgccaggcgggctacatgggagatgaatgtgcatcagtggcaccacctacgaat
ttgcaagtgcgtggagtgatggagcgtactattgacatagattgggaggggtcatctgtt
gtaacagactacttgatcacttatgttccaacaagccctggtggagtacagctggaactg
agagttcaagggaatgtgaccagaaccaccatcagtaagctggagccaggtctggagtat
aagatcaatgtgtacactgtcattgatgatgtcatcagtgtgccagtcaccactgtggtc
tcaacctatctctcaaatcctgatggtctattcttcaaatctattatggaaacatcagtg
gaggttcagtggcaaccttttgactacttgtttgatggttgggaaataagcttcattcca
aagggcaatgatggaggaatgacaacccagctgcccagcaccatcacatcctaccatcag
actggtctaaggcctggagaggagtatactgtgaatctggtggcactgaaagaccaaggc
aggagccagcctgtcactgccactgttaccacattaattgatggaccaacccagcttatt
atccgggatgtctcggacacagtggcatttgtagaatggactctgcccaaggccaaagtg
gatgaaatcatcctgcgctatggaatagtaggttatgatggacccaagaccacttttcat
ttggacccaacactgagtcagtactcactacaagtcctaaggccaggctccagatatgaa
gtgttggtgagcagttttcacaagggcaatgaaagtagaatcatctctgctgagtttgtt
acagagattgatccacccaaacatttgcgggtactctctaagacatccacatctctggag
ctggagtgggacaacagcaaggctgctgtgaagtattattgtgttgtgtatagtacactg
gccggagatcagtacaataaaatcataatcccaagtagcaatggaacaacaaccaagacc
actctcacaaatctgcaaccaggtactgaatatggcattgggatctcagccattctgggt
accaaccaaagcaacccagccacaatgaatgccaggacaggtcttgacatccccatggac
ctgatggtcacagcctccacagaaaacagcatcactttactctggggcttggtccaggga
ccagttgagaattacagagtgagctatacctcagctagcggtgtgaccactgaaataact
gtacctagagatatcaacagcacgacactgagtggcctggagcctggtactgagtacacc
atcacagtcatggctcagaggggcagacaacaaagcgcagctgccacaattgatgccttt
acaggcttccgtcctgtgagtcaactctacttctcagacatcacagctcactccttggtc
gtagcctggagtgctccagccccacctgctgatagtttcaagctacaatactctacagat
gatttcactgaggaggttgaagttgttctggatggttccaagaccagaactgtcctttca
ggcctcctgccatccagaaaatatgttgttacactagttaccatgcatggagacacagct
tcagagccagttacaggcaacattctcacaggtatggaccctcccagagagattatggta
tcatacatctctgaggattcagtaacagtatcatgggctaagccgcttgctcattttgat
tactacaaaatgtcctaccagtctgctagagctcaagtggacagtgtggtgattaacaag
gatgtgacaaactatactctgaccagactccatccagcaacagaatatgagatcaagtta
aacactgtgcgtggaagccaagagagcaaggtcatcagcaccagtgtctttacagccatg
gacatgccaatggaactgatggcgctgaacgtcactccacagggagcattgttacgctgg
actcctccacgctccaatgtggataactatgtactgaccctcacccgcagccaagtgaca
gcagacacatttctagtggaagggaacaagcaggaatatcagctgagtcagcttctccct
agcactccctactccattgctctctatgccaccaagggccctttgaccagtggcactgtg
atcaccagcttcatcacacctatggatgctccccagaatctgactgctagtgaagtcaac
caccgtagtgccctcatttcatggcaaccacccattgcagacattgacaactacatgctg
acttataaatcagccgatggaagccgcaaggagctaattctggatgctgaggacacatgg
atccgtctggaggggctggctgagacaacagagtacacagtgagattgcaggcagcccga
ggccttgagaccagtgccattgtgtctacatccttcacaactggaaaccggttgtttgct
gtgccacagaactgcgctcagcatcttttaaatggtgaacttctcagtggagtttacact
gtctacatcaaccgcgacctcagtcagggtgtacaggtttattgtgacatgactactgat
ggtggtggctggattgtgtttcagcgtcgccagaatggcctgactgatttttccaggaag
tggagtgaatatagggctggatttggaaatctggaggatgagttctggctaggtttggag
aatattcacaagattacagctcaaggacgctctgagctacgcattgacatgagaaatggc
catgaggcagtgtatgccaactatgaccggttctctattggagactccagaagcctctac
aaactaaggataggggaatataatggcactgctggtgactctctgagctaccaccatggt
cgacctttctccactaaagacaaggataatgacaacgctgtgactaactgtgcactttcc
tacaaaggagcttggtggtataaaaactgtcacagagtcaacctaaatggcaaatatgga
gagtccagacacagtcagggtatcaactggcacatgtggaaaggccatgagttctccatc
ccatttgtagaaatgaagatgagaccctataattatcgcagcatcagtggcaagcgaagg
aggtccactctacattaa
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