Neoarius graeffei (lesser salmon catfish): 132884900
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Entry
132884900 CDS
T10798
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132884900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngra03041
]
132884900
03009 Ribosome biogenesis [BR:
ngra03009
]
132884900
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132884900
Spliceosome [BR:
ngra03041
]
Complex A
U1 snRNP components
U1 related factors
132884900
Complex B
132884900
Ribosome biogenesis [BR:
ngra03009
]
Eukaryotic type
Pre-60S particles
Helicases
132884900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
132884900
NCBI-ProteinID:
XP_060774929
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All DBs
Position
4:17149100..17169108
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AA seq
611 aa
AA seq
DB search
MPGYSDRDRGRDRGYGSSAPRFGGGRNGPPPSGKFGNPGDRLRKRHWNLDQLPKFEKNFY
KEHPEVTRRSMQEVEQYRRAKEVTVKGRDCPKPIIKFHEATFPNYVMDIIKKQTWVEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLEHGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
QRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INVGALQLSANHNILQIVDVCNDGEKDDKLIRLLEEIMSEKENKTIIFVETKRRCDELTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKACILIATDVASRGLDVEDVKFVINYDYP
NSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLLQMAEDRG
GRSRGGRGSYKDDRRDRYSGGGRRDFGSYRDRDGDRGYGSSHKAQNGSYGGGGSYNKSNG
SNSNYSSNSYNSGGNPNAFGNQNFQNQPFQGNQAPAQNGMNHPPFPFNPPQPPQQPPQPM
VPYPMPPNFPQ
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgtggaagagatagaggttatggcagcagtgctcct
cgattcggtggaggccgcaatggccctcctccatctggaaaatttggcaatccaggcgac
agactgcgcaaacgacactggaaccttgaccaacttccaaaatttgagaaaaacttctac
aaggagcatcctgaagtaacccgaagatcaatgcaagaggtagaacagtaccgcagggca
aaagaagtcacggtcaaaggcagagactgcccaaagcctattattaaatttcatgaagcc
accttcccaaattatgtaatggacataatcaagaagcagacttgggttgagcccactccc
atccaagctcaaggctggccgctcgcgctaagtggaaaagacatggtcggcattgcccaa
accggctctggaaaaaccctggcatacctgctaccagccattgtgcacattaaccaccag
ccattcctggagcatggagatggtcctatttgcctggtgctagcccccacccgtgagttg
gctcagcaggtgcagcaggtcgctgcagagtatggacgagcttctcgactaaagtccacc
tgcatttacggaggagctcccaaaggacctcagattcgagaccttgagagaggtgttgag
atctgcattgccactcctggtcgtctgattgacttcctggaggcaggaaagaccaacctg
caacgttgcacctacctggtgctggacgaggctgaccgcatgctggacatgggcttcgag
ccacagatccgcaaaattgtagatcagatccggcctgacaggcagactctgatgtggagt
gccacttggcccaaagaggtgcgtcagctggctgaagatttcctgaaggagtacgttcag
atcaatgttggagctctgcagcttagcgccaaccacaacatcctgcagattgttgacgtc
tgtaacgatggagagaaggatgacaaactaatccgcttgctggaggagataatgagtgag
aaggagaacaagaccatcatctttgtagagaccaaaagacgatgtgatgaactgacccgg
aggatgaggagagatggatggcctgctatgggaattcatggtgataaaagtcagcaggag
agagactgggtcctgaacgagttcaagtacggtaaagcgtgcatcctcattgcgacagac
gtggcatcgcgtggattagatgtggaggatgtgaaatttgtcatcaattatgactaccct
aactcctctgaggattatatccaccgaatcggccgcacggcccgcagtcagaaaacgggc
acggcctacaccttctttactcccaacaacatgaaacaggccagcgacctgatctcggtc
ctgcgcgaggccaaccaagccatcaaccccaaactgctccagatggcagaggaccgagga
ggtcgttcccggggcggtcggggaagctacaaggacgaccgtcgggaccgctattccggt
gggggtaggagagattttggtagctatagggatagagatggtgacaggggatacggtagc
agccacaaagcacagaacggcagttacggcggaggcggcagctacaacaaaagtaatggt
agtaacagtaactacagtagcaacagctacaacagtgggggaaacccaaatgctttcgga
aaccagaacttccagaaccagccattccaggggaaccaggcgccagcccagaatggaatg
aaccaccctccgttcccctttaacccccctcaacccccccaacagcctccacagcctatg
gtgccctaccctatgccacctaatttcccccagtag
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