KEGG   Neoarius graeffei (lesser salmon catfish): 132884928
Entry
132884928         CDS       T10798                                 
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
  KO
K20177  vacuolar protein sorting-associated protein 3
Organism
ngra  Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:ngra00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    132884928 (tgfbrap1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ngra04131]
    132884928 (tgfbrap1)
Membrane trafficking [BR:ngra04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    132884928 (tgfbrap1)
SSDB
Motif
Pfam: Vps39_1 CNH zf-Vps39_C Clathrin Prok-RING_1
Other DBs
NCBI-GeneID: 132884928
NCBI-ProteinID: XP_060774980
LinkDB
Position
4:complement(21418017..21475165)
AA seq 867 aa
MSVKAFELVPAVEREQLAGEKLRIGVECIECCGQHLYVGTNDGFIHHFLLEERTTAKGQL
SFSSQKLLHKQLGLKKPPSELKAASALERLIVLCDGVILLVDMVTLEPVVSGGTKLKSVT
VFCVNENPVTAEPFCVEMVVASARRRAVHICTVHEDRVQILKEVATPDQPCDLSVDGYFL
CLALPTRYVILNYGSGASQDLFPYDSEERKPIVKRIGREEFLLAAPGGLGMFANAEGISQ
RAPVKWSENVIGAAVCFPYVVALDEGFVTVHSMLDQQLKQTLSFRGGRILQHFEGKVVLA
STKAVYVLVPQPLEQQIQDLLAGHRVEEALTLTEGAQRNIPKDKFQILHKRILQQAGFIQ
FGQLQFSEAKEHFRKGQLDIRELISLCPLLLPASSSFTRCHPPLHEFADLNHLAQGDQEK
VQHCKRFLISYLREVRASESANGFRQDVDTALLKLYAEAGHEGLLELLASDNSCLLADSA
PWLEKHHRYFALGLLYHYHGQDAAALQLWVRVVNGDLQDSTHADLFEYVVNFLSSCKNPD
LVWKYADWALQKDQKLGVRIFTKRPVCKGQTRQLNPDEVITYLQKHNQALILYLEHVVLE
RHLQKEKYHTHLAVLYADRVLTLVSRTSTTEEQLSSARQKLQRLLRESNLYRVQLLLGKL
QDSELLLMERATLHGKLEEHDKALHILVHQLKNSAAAQEYCTWASEAHDHKNRGEIFHQL
LRVYLDPDVPGGPQTVEAVDLLNHHADVFNAPKVLELLPEAWSLPLLRPFLCGAVRASMH
AHRTSQIALGLARAENLQLHHDRLKCRGGPIIVSEKKGCHLCHNTFSEPDCVCLPGGTPV
HTHCATQKLKGSPTKRQIDHAHTSNHT
NT seq 2604 nt   +upstreamnt  +downstreamnt
atgagcgtgaaggccttcgagctggtgcctgctgtggaacgggaacagttggctggcgag
aagctgcgcatcggtgttgagtgcattgaatgctgtggccagcacctgtacgtgggcacc
aacgatggcttcatccatcacttcctgctggaggagcgcaccacagctaaaggacagctg
tccttcagctcgcagaagctcctacacaaacaactaggcctcaaaaagccgccgtctgag
ctgaaagctgcctcggctctggagcgcctcatcgtcttgtgtgatggagtcatcttgctg
gtggatatggtcactctggaaccggtggtatccggagggaccaagcttaaaagcgtgact
gtgttctgtgttaacgagaacccggtgacagccgagcctttctgcgtggagatggtggtg
gcatccgcacggcgccgtgctgtacacatttgcactgtgcatgaggatcgtgtccagatc
ctgaaggaagtggccactcccgatcagccatgcgatctgagcgtggacggttacttcctg
tgcctggcccttcccacacggtatgtgattctgaactatggctcaggggcctcgcaggat
ctattcccctacgacagcgaggagaggaagcccattgtcaaaaggattggcagggaggag
tttctcctggctgcaccaggtggcctcgggatgtttgctaacgctgagggcatctcccag
cgtgctccagtcaagtggtctgagaatgtgattggcgcagccgtatgtttcccatatgtg
gtggctctggacgagggctttgtaacagttcacagcatgctggatcagcagctcaagcag
acgttgtcattcagaggaggacgcatcctgcagcattttgaagggaaagtggtgttggct
tccacaaaggctgtgtatgtgctggtgcctcagcctctggaacaacagatccaggacctg
ttggcaggacatcgcgtggaggaggcactgaccctgactgaaggtgcacagagaaacatt
cctaaagacaagtttcagatattacacaaaagaattctccagcaggcgggattcatccag
tttggccagcttcagttttctgaagctaaagagcattttaggaaggggcagctagacata
cgtgagctgatctcactgtgcccgttgctgctgcctgcctcatcgtcgttcacacggtgc
catccaccactacatgagttcgctgatctgaaccatctggcgcagggtgatcaggagaag
gtgcagcactgcaagcgtttcctcatcagctacttgcgtgaggtgcgtgctagtgaaagt
gccaatggcttcaggcaggacgtggacaccgcactgctgaagctctatgccgaggcgggt
cacgagggcttgctggagctgctggcctctgacaactcttgcctgctggctgacagcgca
ccctggctggagaaacaccacaggtactttgcacttgggctcctgtatcactaccatggc
caggatgctgctgctctacagttgtgggttcgagttgtcaatggggacctccaagactcc
acacatgctgatctgtttgagtatgttgtgaacttcctgagctcctgcaagaacccagat
cttgtatggaagtatgcagactgggccttacaaaaggaccagaagcttggagtccggatc
ttcactaagagaccggtttgtaaagggcagaccaggcagctgaatccagacgaagtgatc
acgtacctacagaagcacaaccaggctctaattctgtacctggaacatgtggttctagag
aggcatttacagaaagagaagtaccacacacacctagctgtgctgtatgccgaccgagtg
ctcactctggtctctcgaacttcaaccacagaggagcagctctcttcagcccgacagaaa
ctgcagagattgctgagggagtccaacctgtatagagtccagctgctactaggtaaactg
caggactctgagctgctgctaatggagagagcgacactacatggcaagctggaggagcac
gataaagcactacatatcttggtgcaccagctgaagaactctgcagctgcacaggaatat
tgcacatgggcatctgaggctcatgatcacaaaaaccgcggggaaattttccatcagctg
ctacgtgtttatttggacccggatgtgcctggagggccacagactgtggaagctgtagac
ttgctgaaccaccatgctgatgtttttaatgctccaaaggttttggaacttctccctgag
gcatggtctctgccattgctccgccccttcctgtgcggggctgtgagggccagcatgcac
gctcaccgcacctcccagattgcactggggcttgcgagagcggagaacctgcagctgcac
catgacaggctgaagtgtcgaggaggtccaatcattgtgtcggaaaaaaagggatgccac
ctgtgccacaacactttcagcgagccagactgtgtgtgcctgcccggtggcacacctgtt
cacacacactgtgccacccagaaacttaagggttcgcccacaaagcgacaaatagaccac
gcccacaccagcaatcacacatga

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