Neoarius graeffei (lesser salmon catfish): 132885027
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Entry
132885027 CDS
T10798
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ngra04121
]
132885027 (pdzrn3b)
Enzymes [BR:
ngra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132885027 (pdzrn3b)
Ubiquitin system [BR:
ngra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
132885027 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-C3HC4_3
Sina_ZnF
zf-C3HC4_4
Prok-RING_4
zf-TRAF
TRAF3_RING
PDZ_Tricorn
zf-rbx1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
132885027
NCBI-ProteinID:
XP_060775241
LinkDB
All DBs
Position
4:complement(41058686..41327114)
Genome browser
AA seq
1048 aa
AA seq
DB search
MGFELERFSGVVDPDLKCNLCHKVLEEPLTTPCGHVFCAACVLPWVAQQRSCPAQCRRRV
SAQELHHVPPLKSLVLKLDIRCEHHARGCRQVVKLQQLSEHAETCEFAPARCRNDGCSQV
LNLKDVHLHMRDACEYRPAGACEQGCGLGLTHRERYVDGHCCVRALKAHSSALQARVSSL
ESEWKRQAGRASKREKSLLAQLSSAHSALQITALRYQRKFTEYSARIDSLTRSCATLPKG
GESKSVTVVLHRESGSLGFNIVGGRPCVDNEDGTSNEGIFVSKIVEHGPVDTEGGLQIHD
RIMEVNGKDLSNATHEQAVEAFRTAKEPIMVQVLRRTPRLKPAGPEEDAHLMDISTQTDI
TFQHIMALSKLPASTPPVLDQYLLPEGHSAQHEYFDPNDYLETMQQDMEREELEYEEVDL
YRTNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQNRE
EAVALLTSEENQNVCLLVARPEIQLDDGWMEDDRNDFLDELHMDMLEQQHHQAMQFTASM
LQQKKPVEDGGMMDTGTLLSQQHEKDSGVGRTDESTRNDESSEQENLCDDQTSASTTLGS
HRRLAYSQDTLGSSDLPFSNESFISADYTDADFLGDFPVDECERFRELLELKCQVRSGGG
MGINWPSFGIDGGQGFSGAGDDVVDKELELLNAELRNIELECLSIVRAHRTQQLREQPWM
LHNSGFRNYNTSVDARRHELADISELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLH
RANEGLAEASAGGTVTSSNTRILRPLLSPVQEASVSSSSRAAPPKDPDTGHHSEAKERKP
NRLSHPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLASMCRDPVSAEPKAEW
KVKIRSDGTRYITKRPARDRLLKERALRIREERSGGMTTDDDAASELKMGRYWSKEERKQ
HAVRAREQRQRREFMKQSRTDWLKEQNGSGADDKKEVNIIELSHKKMMKKRNKKIFDNWM
TIQELLTHGARSPDGTRVYNSLLSVTTV
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgagttggagcggtttagcggcgtcgtggacccggacctgaagtgtaacctc
tgccacaaagtgctggaggagcctctcacaacgccgtgcggccacgtcttctgcgcggcg
tgcgtgttgccgtgggtggcgcagcagcgcagctgtccggcgcagtgccggcggcgcgtg
tcggcccaggagctgcaccatgttccgccgctcaagagcctcgtgctcaagctggatatc
cgctgcgagcatcacgcgcggggctgccgccaagtcgtcaagctccagcagctctccgag
cacgcagagacgtgtgagttcgccccggcgcgctgccgcaacgacggctgcagccaggtg
ctcaacctcaaggacgtgcacttgcacatgcgcgacgcctgcgagtaccggccggctggc
gcgtgcgagcagggctgcgggctcggcctgacgcaccgcgagcgctacgtggacggacac
tgctgcgtgcgcgcgctcaaggcgcacagcagcgcgctgcaggcccgagtcagcagcctg
gagagcgagtggaagaggcaggcggggcgcgcgagcaagcgcgagaaatccctcctggcg
cagctctcctccgcgcacagcgcgctgcagataacggcgctgcgctaccagaggaagttc
accgagtacagcgcgcgcatcgactcgctcaccaggagctgcgcgacgcttccgaagggt
ggcgagagcaaaagtgtcacagttgtgctccacagagagtctggatctttgggctttaat
attgttggaggacgaccatgtgtggataatgaagatgggacttcaaatgaaggtatcttt
gtatcaaagattgtggagcatggaccagtggatacagaaggggggcttcagattcatgac
agaataatggaggtaaatggcaaagacctgtccaacgcgactcacgagcaggcggtagag
gctttccgcacagccaaagagcccatcatggtgcaggtgttgcgcagaacaccgaggctc
aaacctgcaggacctgaagaggatgcccatttgatggacatcagtacccagacggacatc
accttccagcacattatggccctcagcaagctgcctgcctcaacaccacctgtacttgat
cagtacctgctgcctgaaggacacagtgcccagcatgagtatttcgacccgaacgattac
ctagagaccatgcaacaagatatggaaagagaagaacttgaatatgaggaagtggatttg
tacaggacaaatatccaggacaagctgggcttgacggtgtgctataggactgatgacgag
gatgaaactgggatatatgtcagtgagattgatccaaacagcattgctgcaaaagatggt
cgactcagggaaggggacagaatcatccagatcaatggtatagaggtgcagaatcgggag
gaggcggtggctctgcttacgagtgaagaaaaccagaatgtatgcttgctggtggctcgg
ccagagatacagcttgatgatggatggatggaagatgacagaaatgatttcctcgatgaa
ctgcacatggatatgctcgagcagcagcatcaccaggccatgcagttcactgccagcatg
ctccaacagaagaagcctgtggaggatggaggcatgatggacacaggaactctgctctcg
cagcagcatgagaaggacagcggcgtgggccgcacagacgagagcacccgtaatgatgag
agctcagagcaggagaacctctgcgatgaccagaccagtgcctctaccacactgggcagt
cacaggcgcctggcatacagtcaggacacactgggaagcagtgaccttcccttcagcaat
gagtccttcatctcggctgactacaccgatgcagacttcctgggtgacttcccagttgat
gagtgtgagcgtttcagggagctgttggagctcaaatgccaggtgaggagtgggggtggc
atgggcataaactggcccagctttggcatagatggcggacaaggattcagcggtgcaggg
gatgatgtcgtggacaaggagctggagcttcttaacgcagagctgcgtaacattgaactg
gaatgcctgagcattgtgcgggcgcaccgtacacagcagctacgtgagcagccatggatg
ttgcacaacagcggcttccgcaactataacacaagtgtggatgcacggcgccacgagctg
gccgatatcagcgagctgcccgagaagtcagacaaggacagctcgagtgcttacaataca
ggagagagctgccgcagcacaccacttaccctcgagatctcgccagacaactctttacac
cgagctaatgaagggcttgcagaagccagtgcaggaggtactgtaacaagctcaaacacc
agaatcttaaggcccctgctatcacctgtccaagaggcttcggtttccagcagcagtcga
gctgctcctcccaaagatcctgatactggccaccattctgaggccaaagagcgcaagccg
aatcgcctcagccatccacactcgccctacaaacatgctcacatcccagcacacgctcag
cattatcaaagctacatgcagttgattcagcaaaagtcagctgtagagtacgcacaaagc
cagatgagtctcgccagcatgtgccgggacccagtatccgccgagcccaaagcagaatgg
aaggtgaagatccgcagcgatggcacccggtacatcaccaagagaccagcacgtgatcgc
ctgttgaaggagcgtgccctgcgcatccgagaggagcgcagtggaggcatgaccacagac
gacgacgcagccagcgagctgaagatgggccgctactggagcaaggaggagcgtaagcag
cacgccgtacgtgccagagaacagcgtcaacggcgcgagttcatgaagcagagtcgcaca
gactggctgaaggagcagaacggcagcggcgccgacgacaaaaaggaggtcaacatcatt
gaactaagtcacaaaaaaatgatgaagaagcgcaacaagaagatcttcgataactggatg
accatccaggaactgctcacgcacggtgcacggtctccagatggcacacgagtgtacaac
tcgctactgtcggtgaccacagtgtga
DBGET
integrated database retrieval system
