KEGG   Neoarius graeffei (lesser salmon catfish): 132885168
Entry
132885168         CDS       T10798                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
ngra  Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ngra00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    132885168 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ngra03019]
    132885168 (rae1)
   03036 Chromosome and associated proteins [BR:ngra03036]
    132885168 (rae1)
Messenger RNA biogenesis [BR:ngra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     132885168 (rae1)
Chromosome and associated proteins [BR:ngra03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    132885168 (rae1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st WDR55 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd EIF3I WD40_Gbeta Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_RFWD3 Beta-prop_IFT140_1st eIF2A Beta-prop_EIPR1 NBCH_WD40 Beta-prop_ACSF4 ExoI_SH3 Beta-prop_SPT8 Beta-prop_WDR41
Other DBs
NCBI-GeneID: 132885168
NCBI-ProteinID: XP_060775502
LinkDB
Position
4:67804750..67823695
AA seq 369 aa
MSLFGSSSGFGAGSTGVFGSTTTDSHNPMKDVEVTSPPDDSISCLAFSPPTLPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQA
MQIAQHEGPIRTIHWIKAPNYSCVMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAIAFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNHNGNIFAYSSSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgagcttgttcggatcaagttctggatttggggccggaagtacaggtgttttcggcagc
accacaacagacagccataatccaatgaaggatgttgaagtgacgtccccgcctgatgac
agcataagctgtttggcctttagccctccaacattgcctggaaactttttgattggtggc
tcttgggccaatgatgtgagatgctgggaggtgcaggataacgggcagacggtccctaaa
gctcagcagatgcacacagggcctgtgctggatgtctgctggagtgatgatggaagtaaa
gtcttcacagcgtcctgtgacaaaactgccaagatgtgggatctgaacagtaaccaggcc
atgcagatagcacaacatgaaggtccaatcaggacaatccactggataaaagctccaaac
tacagctgtgtcatgactggtagttgggacaaaacactgaaattttgggacactcgctct
ccaaaccccatgatgtccctccagatgccagagaggtgttactgtgctgatgtggtgtat
ccaatggctgtggtggccactgcagaacgagggctaattgtgtaccagttggagaatcag
ccgtctgagttccggcgtatagattcacctctgaaacatcagcaccgctgtgtggccatc
tttaaggacaaacagaataaacccactggatttgcactgggcagtattgaggggagagtg
gccattcactacattaacccacccaatcccgccaaggataatttcaccttcaagtgccat
agatctaatggaacaaacaccgccacaccccaggatatttatgctgtcaatgctattgct
ttccatccagtgcacggcacgttggccacagtgggctctgacggtcgctttagtttctgg
gataaagatgctcgcacaaagctgaaaacctctgagcagcttgatcagccgatcacagct
tgctgcttcaaccacaacggcaacatctttgcttacagctccagctacgattggtccaag
ggacatgagtattacaacccccagaagaagaactacatttttctgcgaaatgctgctgag
gaactcaagcctcggaacaagaaatggtga

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