Neoarius graeffei (lesser salmon catfish): 132886425
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Entry
132886425 CDS
T10798
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
132886425 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ngra01009
]
132886425 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ngra04131
]
132886425 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
ngra03029
]
132886425 (rb1cc1)
Protein phosphatases and associated proteins [BR:
ngra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132886425 (rb1cc1)
Membrane trafficking [BR:
ngra04131
]
Autophagy
Autophagosome formation proteins
ULK complex
132886425 (rb1cc1)
Mitochondrial biogenesis [BR:
ngra03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
132886425 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
132886425
NCBI-ProteinID:
XP_060777031
LinkDB
All DBs
Position
5:complement(5737151..5802051)
Genome browser
AA seq
1616 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMEMKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTTSYQKLLSKFDIAYTNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRESLEKSSSPQPRTRNEPDDDDDDDEE
EEEEGGGQSAILCPTDVQQKQKSPAEQDRAGRSSSGLQEALEEEKEQEETEKTDAPSFNV
TLLDWINVQDRPNDVEAVVRKCFDSINRLDPRIIQPFLIECRDTITKLDNQNMKAIKGLE
DRLYALDQMIASCKKLVNEQKELAQGFLANQMRAENLKDNSVLPDLCLSHANQLMIMLTN
HRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLERVRVV
EALSTVPQMYCLAVVEVVRRKMFIKHYREWASALVKDGKNLYEAEKAKRETFGKLFRKSF
LRNRLFRGLDSWPPSSFCTRKPRKFDFELPDISLNDLQYLKSCCPAEVQPFLRVPSLCDF
EPLNHHTEALRQLVQAAQSVDEMSQTITDLLSELKVSGNQSAQRLSSESRTETTPTSSKT
LPTLSIQSPPTQPLSLPAPLEDLSPDSIDAHTFDFETIGHPNMDPVLQQGSLDLDSLAES
PESDFMSAVNEFVIEENVTSPNPISDPTSPEMMVESLYSSVINAIDSKRIQDTTLLEKEN
SVIMTLKLTVDKYRSAAEESQSSMRKVKDDLCHFQGLVLKEQRDFGFALKKMSAEIHRIV
GNIRRCQEEELGEAHQNELQKLKDDHEKHVLRLTDELEGNHKIVRDVQRAMLDLEGLVER
KEKELAQTEGEKERLLQEMRNSHQQAVQELERSLSERSKELQDALRSKDALANQLDGLRV
EIEQMIRQEMENAEKNRLQELEARLKTEHLAQMEILKHSNQSALDTLTLENQVKLKELAE
SHLTELKERECRLKDYDARISELADARCKLEVEMALKETETEDLRLQYEEAKNQQEEALK
AEMESQTKALQEQVEALAQQLQKKNEEHEQGLAELRALMRIEKDHCISELVERHDEESTL
LRHEFSALKQKSQDAEKDCEERLQEIQHQLDDQLKTLRQELEEEQRAFREKERDFQTAIS
DLQAVNTLLSGQLEQERQEARRTAEEEKEALKDALLQKEELEVRLLRKIKLLETRLGERQ
SADKVVDAGDGEAVDVALQQRLDEERESLLGKLEMLEKKKNEELQNLKTSLIAEQQTNFN
TVLMREKLKKEQIISELNEKLKKVTLQQEKDKSLIETLSEDRATILQEKKHLEEELNRLR
SSTLVSSAFCVANPGAVPVETPGACGPVPAEVPVLPALESERLGSVAALRDDDRVDSAVE
ASMMTVHDNTLMLSEEKQRILMLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIR
DFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLAALDLKPGLRTHTEHCDISHLCLK
KMLVSVVASGATRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4851 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtacgtgttccaggtcaataacgggagcacgttgacgttcgacaccgaactc
gcggtgcaaactgttctggacctcaaacatgcaatccaggccaagtacaagatcgccact
cagcatcaggtgctggtggttaatggtggcgagtgtatggtggctgagaggagggtgtgt
agctacagtgccggcacggatacgaaccccatcttcttgttcaacaaagagatgatcttg
tgtgaccgtgcgccgacgatccccaaaaccaccttctccatcgagaacgagatggagatg
aaggtcgaggagtccctcatgatgccggccgtgtttcacaccgtggcttcgcggacgcag
ctcgccgtggaaatgtttgaagttgccaagaagctgtgctctttctgtgaacgcctggtc
catgacgaacaccttcagcaccagggctgggctgcgatcatggccaacctggatgactgc
accacatcttatcagaagctgctgtcgaaattcgacatcgcgtacactaattaccagcag
gatttcgaagacatcaaactgaagctaaccaagctcgggacggccgtctcggtcatggct
aaaatccctctgctggagtgcctgacccgccacagctacagagagagcctggagaaatcc
tcctccccacagccccgaacccggaacgagcctgacgacgacgacgacgatgatgaagaa
gaagaagaagaaggaggaggccagtcggccatcttgtgccctacagatgtccagcagaag
cagaaatctcccgcggagcaggacagagccgggaggagcagcagcgggctgcaggaggcg
ctggaggaagaaaaggagcaggaggagacggaaaaaacggacgctccttcgtttaacgtc
acgctgctggactggatcaacgtacaggaccgacccaatgacgtcgaggctgtcgtgagg
aagtgcttcgactccattaacagactcgatccgcggattattcagccgtttctgatcgag
tgccgggacactattaccaaactggataatcaaaacatgaaggccataaagggactcgaa
gacagattgtatgcgctcgaccagatgattgccagctgcaaaaagctcgtgaacgaacag
aaggagctcgctcagggatttttagccaatcagatgagggctgaaaacctgaaggacaac
tcagtgctgccggacctgtgtctgagtcacgccaatcagctcatgatcatgctgaccaac
cacaggaagctgctggacataaagcagaaatgcacaactgcgaaacaggaactagccaac
aatctgcaagtccgtctcaaatggtgctgctacgtgatgttgcacgctgatcaggatggc
gagaagctgcaagcgctgctgcgcctcctgaccgagctgctggagcgagtgcgtgtggtc
gaggccctcagcactgtcccgcagatgtactgcctggccgtggtggaggtggtgcgccgg
aaaatgttcattaaacactacagagagtgggccagtgccctggtaaaagatgggaaaaac
ctctatgaggcagagaaggccaaaagggagacgttcggcaagctcttcagaaagtcgttc
ctcagaaatcgtttgtttcgaggacttgactcatggcctccctcgtcattttgcacaaga
aagcctcgcaagtttgactttgaacttccggatatttccctgaatgacttgcagtatctg
aagagctgctgtcctgctgaagtgcaaccttttctcagggttccatcactatgtgatttt
gagccgctaaaccatcacacagaagctcttcgtcagctcgtccaagcagctcagagcgtg
gacgagatgtctcaaaccatcacagacttactgagtgaactgaaggtttctgggaaccag
agtgcacagagactaagctcggaaagcagaacagagaccacgcccacatcttctaaaacc
ctgcccaccctcagtatacagtctccacccactcagccgctgtcccttccagctccctta
gaagatctgtctcctgacagtatagacgcccatacgtttgactttgaaaccataggacat
cccaacatggatcccgtgctccagcagggctctctggacctggactccttagccgagagc
ccagaatcggacttcatgtcggcggtcaatgagtttgtcatcgaagagaacgtaacatca
cccaatcccatcagtgacccgacaagtcccgagatgatggtcgagtctctttactcctcg
gttatcaatgctatagatagcaaaaggatccaggacacgaccttgctcgagaaagagaac
tccgtcatcatgaccctcaagctgactgtagacaagtatcgttcggctgctgaggagtcg
cagagcagcatgaggaaagttaaagatgacctgtgccatttccagggacttgttttgaaa
gagcagcgggactttggcttcgccctgaagaagatgagtgcagaaattcacaggatagtc
ggtaatattagacgttgtcaggaagaggaactcggagaggcacaccagaatgagctccag
aagctgaaagatgatcacgaaaaacacgtcctccgacttactgacgagctggaagggaac
cacaagatcgtccgggacgtccagagggctatgctcgacctcgaagggctcgtggagagg
aaggagaaagagctggctcagacggagggtgagaaggagcgtctgctgcaggagatgcgc
aacagccaccagcaggctgtccaggagttggagaggagtctctccgagcgcagcaaggag
cttcaagacgccctgcgttccaaagacgcgcttgccaaccagctggacggcctgcgagtt
gagatcgagcagatgatccgccaagagatggagaacgcagagaagaaccgtctccaagag
ttggaagctcgtctgaaaacggagcatctggcgcaaatggagatcctgaaacacagcaac
cagagtgctcttgacaccctcacgcttgagaaccaagtcaaactgaaggagctcgcggaa
tcgcacttgacggaactgaaggagcgcgagtgccgcctgaaggactacgacgcgcgcatc
agtgagctcgccgacgcccggtgcaaactcgaagtggaaatggctctgaaggagaccgaa
acggaagacctgcgcttgcagtacgaggaagccaagaaccagcaggaggaggctctgaag
gcggagatggagtcacagacaaaggctctccaggagcaagtcgaggcgctggcgcagcag
ctgcagaagaagaacgaggagcacgagcaaggcctcgccgagctgcgcgctctcatgcgc
atcgagaaggaccactgcatctcggagctggtggagcggcacgacgaggagagcacgctg
ctgcgccacgagttctccgcactcaagcagaagtctcaggacgctgagaaggactgtgag
gaacgcctccaggagattcagcaccagctggacgaccagctcaaaactttacgccaggaa
ctggaggaggagcagagggctttcagggagaaagagcgcgacttccaaacggccatcagc
gacctgcaggctgtaaacacgctcctgtccgggcagctggagcaggaacgtcaggaggcc
cggcgaacggcggaggaggagaaagaggcgctaaaagacgccttgctgcagaaggaggaa
ctggaagtgaggctgttaagaaaaattaaactacttgaaactcggcttggggagcgacaa
tcggctgacaaagttgttgatgctggagacggagaagctgtggacgtggcgttgcagcag
aggttggacgaagaaagagagtctctgctgggcaagctggagatgctggagaagaagaag
aacgaggagctgcagaacctgaagacctcgctgatcgctgagcagcagacgaatttcaat
actgtcctgatgcgggagaagttaaagaaggagcagatcatcagtgagctgaatgagaag
ctgaagaaggtgacgctgcagcaggagaaagataagagcctgatcgagactctgtctgag
gaccgcgccaccatcctgcaggagaaaaagcacctcgaggaggagctcaaccgcctccgg
agctccaccctcgtctcctccgctttctgcgtggccaatcccggcgctgttcccgtggag
acgcccggagcgtgtgggcccgtccctgccgaggtccccgtcctgcctgcgctggagtcc
gagcggctggggtctgtggctgcgctgcgagacgatgacagagtggactctgctgtcgaa
gcgagcatgatgaccgtccatgataacacgctgatgctgtcggaggagaagcagcggatc
ctgatgttggaacgaactctacacatgaaagaagaggagaacaagaggctcagccaaaga
ctgatgtcacagagcatgtcctctgtgtcctcaaggcattcagagaaaatcgccattcga
gactttcaagtcggcgatttggtcctcatcatcctggacgagcggcacgataattacgtg
ctgttcacggtcggccccactctctacttcctgcactcggagtctctcgctgcgctggac
ctcaagccgggtctgcgcacacacaccgagcactgtgacatctcgcacctctgtttgaaa
aagatgcttgtttctgttgtagcctctggagcgacgaggcgaccctgggtcctcgggaag
gtcatggagaaagagtactgtcaggcaaaaaaggcacaaaaccgcttcaaagttcctttg
ggcaccaaattctaccgagtaaaagccgtgccatggaataagaaggtgtaa
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integrated database retrieval system
