Neoarius graeffei (lesser salmon catfish): 132887957
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Entry
132887957 CDS
T10798
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132887957
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132887957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132887957
NCBI-ProteinID:
XP_060779778
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Position
1:complement(54755078..55099839)
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AA seq
678 aa
AA seq
DB search
MKASEAAHQPRCAVKMESDSGSGGQRHYLRAITGAIPFVFSVAAVAFCILLGFQTGDIKN
RMLELESSNGERLLHPFAEVSIDEFNSMVQDRVDEVLSQRSYEHFARVRTARQVSPECNC
PPGPPGKRGRRGHNGEPGHPGRPGPDGPPGLKGEKGDQGDQGPRMVFPKINHGFLSADQQ
LIKRRLIKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGAPGLPGDPGAPGELGPVG
PEGPPGLKGSTGPTGIPGIDGLKGEVGLPGLDGTPGAKGDRGEPGEKGDMGEEGPKGNVG
EKGDAGSSAAGIKGEPGEPGRSGQKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGT
KGERGEPGLPEKGERGETGPFGPKGAQGEPGTPGLKGAKGDTGDKGDVGLTGPTGPAGEK
GDQGTTEIIDYSGNIQEALQKITTITVTGPPGPPGPVGPQGIKGDQGPPGLPGLDGERGH
KGSKGDMGMPGMSGDKGSVGLPGLPGSNGQKGEKGDTGLPGPQGPSIIGPPGALGPHGPP
GPMGPHGFPGQKGEAGLPGLKGARGEPGHKGDRGPLGLPGASGLDGKPGLRGTDGPVGAP
GPAGPKGDRGEKGATGEPGPRGPYGLPGAAGTPGLDGEKGKKGKKGPKGEKGEQGAPGLD
APCPLGPDGLPMPGCWQK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcttccgaagccgcacatcagcccagatgcgctgtgaaaatggagagcgactcg
ggttctggcggccagcggcattatctccgcgccatcaccggtgccatcccgtttgttttc
tccgtcgcggctgtcgccttttgcatcctcttggggtttcaaaccggtgacataaagaac
agaatgctcgagttagaaagcagcaatggagagcggcttttacacccgtttgctgaggtc
tccatagacgagtttaactcaatggtacaggacagagtggacgaggttctgtcacagcgc
tcctacgaacattttgcacgcgtcaggacagcacgtcaagtctcacctgaatgcaactgc
ccaccaggcccaccgggaaagcgaggaagaagaggacacaatggagaacccggtcatcca
ggccgtcctggcccagatggtccacccggtctgaaaggtgagaagggagatcaaggagac
cagggaccgcggatggtcttccctaagatcaatcatggctttctttctgctgatcagcag
ctcattaagcgtcggctcattaagggtgatcagggccaagcaggccctccaggcccccca
ggacctccaggtcctcctggtcccaggggacccccaggagacacagggaaggatggtccc
aggggagctccagggttacccggtgacccaggagccccaggcgagctcggccctgtggga
cccgagggccctccaggactcaagggctccactgggccaactggcattccaggtattgac
ggattgaagggcgaggtgggtctgcccggattagatggaacccccggtgccaagggtgac
agaggagagccaggtgaaaagggtgacatgggagaagaagggccaaagggcaatgttggt
gagaagggtgatgcagggtcttctgcagctggcattaagggtgaaccaggtgaaccagga
cgaagtgggcaaaagggagaaccaggacttccagggctgcctggacttcccggaataaag
ggtgaacctggctttctcggccctcagggagagccagggctgccaggactacctggaacc
aagggagaacgcggagaaccaggattgccagaaaagggtgaacgtggggagacaggccca
tttggaccaaagggagcacaaggggagccaggaacaccaggcctcaaaggagccaagggg
gacactggagacaaaggagatgttggactcacaggacccacaggtccagctggagagaaa
ggtgaccagggtacaactgaaataatcgactacagtggaaacatccaagaagcacttcag
aagataaccactattacagtgacgggtccccctgggcctcctggaccagttggaccacag
ggcattaagggtgatcaaggtcctccaggtcttccaggtcttgatggagaaaggggtcac
aagggttcaaaaggtgacatgggaatgccaggaatgtctggcgataaaggatctgtagga
ttgcccgggctaccaggttccaatggtcagaaaggtgaaaaaggtgatactggcctgcct
ggacctcaaggaccatctattatcggccctcctggggcacttggtccacatggtcctcct
ggtccaatgggcccacatggattccctggacaaaagggggaagcaggtttgcctggtttg
aagggagcacgcggggagcccgggcataagggtgaccgcggacccctgggcctccctgga
gcgtctggcttggatggcaagccgggattaaggggtacagacggcccagttggtgctcct
ggtcctgctggtcctaaaggagatagaggtgagaagggtgccacaggtgaacctggacca
agaggaccatatggattacctggtgctgctgggacacctggcttggatggggagaaggga
aagaagggcaaaaaagggcctaagggggagaaaggagaacagggtgcccctggattagat
gcaccctgcccattggggccagatggattaccaatgcctggctgctggcaaaagtga
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