Neoarius graeffei (lesser salmon catfish): 132888021
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Entry
132888021 CDS
T10798
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04382
Cornified envelope formation
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
ngra04518
Integrin signaling
ngra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132888021 (col4a6)
04518 Integrin signaling
132888021 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132888021 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132888021 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132888021 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ngra04147
]
132888021 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132888021 (col4a6)
Exosome [BR:
ngra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132888021 (col4a6)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132888021 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132888021
NCBI-ProteinID:
XP_060779936
LinkDB
All DBs
Position
1:73390125..73611563
Genome browser
AA seq
1667 aa
AA seq
DB search
MALWLWVLTLVLSLDSTHAGSKTYEPCAGRDCNGRCPCPPRKGSRGQPGPLGPPGPTGPD
GFIGAPGPVGPKGERGHVGYSGPSGPKGDKGPVGVPGFPGVDGIPGHPGQEGPAGLPGAD
GCNGTRGDPGFPGFSGRPGQPGPQGIPGVKGQKGEPRFISTPSVPFGPVGERGFPGPVGL
PGPVGPIGLPGYPGRPGPPGFPGPTGTPGQGYEGEKGEKGDVGLPGDPGRPLVNGVVEFV
GVPKGDKGTQGDIGYPGEPGPQGPPGPYGYKGEYGEKGIPGLPGVRGAPGFNGPLGEDGQ
KGYRGSGGPFGLPGPSGPKGFRGEPGPPGTSVITDGHEYLFQGPRGDPGFEGLPGSVGEP
GLSGPPGPPGQPGSSSFQPGIQGLPGFPGPAGSKGEKGDPGRPSTSPDGLPGNRGFPGPP
GPPGPQGITQTSLFPRELPGPPGVKGRRGPLGERGRKGDKGEDGSCECFGEISGRQGPQG
FEGLPGFTGLNGQKGEVGDPGSAGLRGPQGPRGRPGEYGFTGAKGEKGDSYYAGRRGQKG
DIGQPGPAGPPGDIGQPGRDGATGFLGLPGPPGDAGFGVIGDKGYPGPPGQKGRPGATGE
PGSGYPGTAGVRGFPGDPGIIGLPGSPGSPGPPGQSLPCVISGEPGNPGFPGLPGVPGPK
GQPGPPGLGGRPGANGAKGERGDQGSGGQPGKQGFPGPRGDPGLPGTTENGLPGPRGKDG
RPGLQGLKGEPGEILGAAPGIPGLPGQTGEPGDKGQPGTPGLPGKFGFDAPSGKPGVKGE
HGVNGFPGLPGKPGPRGLNASEVSGPRGPPGNPGFTGPAGFPGLKGARGEPGRQGLGRKG
SPGRPGIPGPKGQRGSPGDTIPGRDGQLGRPGTKGQKGLPGLVGFPGSPGRSGGSGLPGS
KGLPGNPGFNGEPGTYGPLGIKGDRGDPGPPGPSPAPLPLHHNKGEQGSPGPTGLPGFPG
PRGNKGTPGLPGSPGFPGLPGFADQAKGLPGDSGFPGRTGSPGPIGPKGASGVSGFPGMP
GPQGDDGAPGFFGSPGTSGLLGSKGEKGVSTGAPGPPGRRGLVGNVGFPGIPGLAGDQGS
RGLPGEYGYPGRKGLPGDPGRPGQGGPPGPQGTRGLPGFPGQKGQDGEPGRRAAPGRAGE
KGLSGAPGLDGLNGLAGPKGQQGIPGVVEGGQPGAPGLNGLKGERGLSLPGAPGYPGVKG
SKGDIGYPGQPGFPGPPGPRGGSAISTGILGPPGDAGLPGLDGERGLLGPPGPQGPAGPG
TDQGDRGDPGFPGIPGIPGKRGEPGFAGGRGALGNPGLKGSPGDPGVSGLTGRPGFPGDQ
GSYGSKGPKGFRGNPGSKGLPGTIFPPPEPIRLPPGDIGPQGATGLSGYTGSPGQPGFPG
RPGPKGKVGSMGKPGRTGPAGPPGTIGDPGFPGYQGPSGNKGFPGSPGQPGPAGLPGRTI
GIGYTLVKHSQSSQVPMCPQGMEKLWDGYSLLYVEGQETAHNQDLGLAGSCLPRFSTIPF
LYCTPNELCYYASRNDKSYWLSTTASIPMMPVANEQIIQYISRCSVCEAPSQAVAVHSQD
VTIPSCPYGWRSLWIGYSFLMHTAAGSEGGGQSLVSPGSCLEDFRTTPFIECNGVRGTCF
FFNTKHSFWLTTVQQERQFTQSPDSRTLKGEQYRSHVSRCQVCMKIL
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atggcgctctggctttgggttctcactctggtcttatctctggactcgacacacgcaggg
tcaaagacttatgaaccatgtgcagggcgtgactgtaacggaagatgtccctgtcctccg
agaaaaggtagcaggggtcagcctgggcctttaggaccacctggccccactggacctgat
ggctttattggggccccagggcctgtgggacctaaaggagaaagagggcatgttggttac
tcagggccatctgggcccaaaggagacaagggtcctgtgggtgttcctggttttccaggt
gtcgatggtattcctggtcacccaggccaggagggaccagcaggactgccaggagcagac
ggctgtaacggtacacgaggtgaccctgggttccctggcttctctggaaggcctggccaa
cctggacctcaagggatacctggtgtcaaagggcaaaaaggagaaccacggttcatttct
acaccctcggttccttttggtcctgttggtgaacgcggttttcctggtccagttggcctc
ccaggtcccgtcggccctatcggtttacctggttaccctggacgtcctggtcctccaggc
tttcctgggccaacaggaacccctggccagggttatgaaggggagaaaggagagaaggga
gacgtgggcctgcccggtgacccaggccgcccactggtcaatggagttgtggagtttgtt
ggagttccaaaaggagacaaaggaactcagggtgatattggctatcctggtgaaccagga
ccacaaggacccccaggcccatatggctacaagggggaatatggagagaaaggaattcct
ggattacctggtgtgaggggtgctcctggttttaacggaccactcggagaagacggccaa
aaagggtatcgtgggagtggtggtcccttcggattaccaggtccatcaggccctaaaggt
ttcaggggagaaccagggccaccagggacatctgtcattactgatggacatgaatatctt
tttcaaggtccacgaggtgatcctggttttgaaggccttccaggttcggttggagaacca
ggtttatcaggacctcctggaccaccaggtcagcctggatcatcatccttccaaccaggt
attcaaggccttcctggcttccctggtccagctggatctaagggagaaaagggtgaccca
ggtcgtccaagcaccagccctgacggtttgcctggaaacagaggatttcctggacctccg
ggtccacctggacctcaaggcataactcagacatctctgtttcctagggaactgcctgga
cccccaggtgtaaaaggcagaagaggtccactgggagagagaggtcgtaaaggagacaaa
ggggaagatggaagttgtgaatgctttggtgaaatctctggcagacagggccctcaggga
tttgaagggctccctggtttcacggggctcaatgggcagaaaggagaagttggtgaccca
ggatctgcaggactccgtggaccacaggggccaagaggtcgtcctggagagtatgggttt
actggggctaaaggtgagaaaggagactcttattatgctggtagacgaggacagaagggt
gacattggccagccagggcctgctggtcctccaggtgacatcggccaaccaggaagagat
ggagccactggctttcttggattgccaggaccaccgggagatgctggttttggggtgatt
ggagacaaaggctatcctggacctcctggtcagaaaggtcgccctggtgcaacgggtgag
cctggcagtggctacccaggcactgctggtgttagagggtttccaggcgaccctggtatc
attgggcttccagggagccctggatcaccaggaccaccaggacaatcactgccctgcgta
atttcaggagagcctgggaatccaggtttccccggactgcctggagtgccaggcccgaaa
ggacagccgggtccaccaggactaggtggaaggccaggtgctaatggggcaaaaggtgag
agaggagatcaaggtagtggaggtcaacccggaaaacaaggattccctggaccaagagga
gatccaggtttaccaggcactacagaaaatggccttccaggtcctcggggaaaagatggc
cgtcctgggctgcaaggactgaaaggagagcctggtgaaattttaggggcagctccagga
atacctggacttccaggacaaacaggagagcctggagacaagggacagccaggcactcct
ggattaccaggcaaatttggttttgatgcaccaagtggtaagccaggtgtaaagggtgag
catggtgttaatggcttcccaggacttccagggaagccaggaccacggggtctgaatgct
tctgaagtcagtggacctcgagggccacctggcaatcctggattcactggacctgcaggt
ttcccaggactcaagggtgcaagaggagagccaggacgccaaggcttgggtagaaagggt
tctcctggacgacctggaattccaggaccaaaaggacaaaggggaagtcctggagataca
attccaggacgtgatggacaattaggaaggccaggaactaaagggcagaagggactccct
ggattggtaggattccctggatcacctggacgttccggaggctctggactgccagggagt
aaaggtctacctggaaacccaggatttaatggtgaacctggaacatatggccctcttggt
attaaaggggaccgtggagacccaggcccaccaggaccttccccagctcccctcccattg
catcataacaaaggggaacaaggttctcctggacctactggactgcctggatttccagga
ccaagaggtaataagggaacccctggtttacctggtagtccaggctttcctggtctgcca
gggtttgctgatcaagctaagggtctacctggtgattcaggtttcccagggcgcacaggt
tctccgggacctataggacctaaaggggcatctggtgtttctggtttccctggcatgcct
ggacctcagggtgatgatggagctcctggtttctttggatcacctggtacttcaggattg
cttggtagcaaaggtgagaaaggagtctctactggagcacctgggccccctggaagaagg
ggacttgtcggaaatgttggattccctggtatcccaggccttgctggtgatcaaggttct
cgaggtttgccaggagagtatggatatcctgggcggaaaggtctgcctggagatccagga
aggcctgggcaaggaggtccacctgggccccagggtactaggggtctccctggttttcca
gggcagaagggacaggatggtgaaccaggtcgccgtgcagctccaggtcgtgcaggagaa
aaaggtttatctggagctcctggtttagatggactcaatggacttgcagggcccaaaggt
caacaaggaatacctggtgtggtagagggtggtcagcctggagccccgggattgaatggt
ctaaagggtgaaagaggcttgtcgttacctggagcaccaggatatcctggagtaaaagga
tccaaaggggatattggttaccctggacagccagggttcccaggtcctccaggtcctcgt
gggggatcagccatctctactggaattcttggtcctccaggagatgctggtctacctgga
ctagatggtgaaagaggtcttcttggcccacctggtcctcaaggtccagctggacctgga
acagaccagggtgacagaggagatcctggatttcctggaattcctggaattcctgggaaa
cgtggtgaacctggatttgcaggagggcgtggagcacttggcaacccaggattaaaaggt
tctccaggagaccctggagttagtggactaacaggacgtccaggcttccctggagatcag
ggaagttatggtagcaaaggaccaaaaggattcaggggtaatcctggtagcaaaggtctt
ccaggaactattttcccacccccagaacccatccgattgccacctggggatattggtcca
caaggagccactggtctttctggttatacaggatcaccaggccagcctggtttccctgga
cgtccaggtcctaaaggaaaagttggatcgatgggcaaacctggacgcaccggtccagct
ggacctccaggaacaattggagaccctggatttccaggatatcaaggacccagtggtaac
aaaggttttcctggtagtccgggacaaccaggtcctgcaggtttgcctggccgtaccatt
gggatcggctacactctggtgaaacacagccagtccagtcaggtcccgatgtgccctcag
ggcatggaaaagttgtgggatggctacagcttgctttatgtagaaggacaggagacggca
cataaccaagacctggggctggctggctcctgtctacctcgtttcagcactattcccttc
ctttactgcacaccaaatgaactctgttattacgccagccgcaatgacaagtcctactgg
ctatccacaacagcatctattcccatgatgcctgtggccaatgagcagattattcagtac
atcagccgttgttcagtatgtgaagccccatctcaagctgtggctgtccacagccaggat
gtcactattccctcctgtccatacgggtggaggagcctgtggattggttactccttcctt
atgcacacggctgcagggagtgagggaggtggccagtcgctggtttctcctggctcatgt
ttagaagacttccgtacaacaccttttatcgaatgcaacggggtgcggggcacctgcttc
ttcttcaacaccaaacatagcttctggctcaccactgtgcaacaggagaggcagtttaca
caaagtcctgattcacggaccctgaagggagagcagtaccgcagccacgtcagccgctgt
caggtctgcatgaagatcttgtag
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