Neoarius graeffei (lesser salmon catfish): 132888036
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Entry
132888036 CDS
T10798
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132888036 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132888036 (edc4)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132888036 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
132888036 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EDC4L
Apolipoprotein
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
132888036
NCBI-ProteinID:
XP_060779920
LinkDB
All DBs
Position
6:complement(59238835..59338005)
Genome browser
AA seq
1382 aa
AA seq
DB search
MASSSSIDIEGATQHLRDILKLDRPANSTDSTAGESQRKTSCNGELNGLLGTDLIGAGVR
SAVMEPTTHSSDNMNMADTQTISLTGDDGSTCIPITASNVVIVASRDSSIDSKARGSNKV
KIQPMAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNHYMIRVLRLGSTERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNMFIWQLTSDNSKIQDEVVVHIRRPEDTPLNSSRRLIWCP
FIPEDNEENPEDSCQTLALLHEDRAEVWDLDILRSSNTTWPVEATEIKEGFITIKGHTAR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWQPHNGRPLSCLLFCDNHKR
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIKFSPDPANSNVLPSLKASLDLSAEC
LILTDVQRKVLYVMELLQDQEKGHASFMAVSEFLLTHPVLSFGVQDVSHARLRHTEVLPP
DEESESMTTEGSQGPLESKSGIQIKLYCVHTKSLQDVQIWFQPNQGAAASLFLPTCSGSQ
DGFGFADPLTDLSMDVLSSDKESGASGSQTDLCKIPSLPAPADFLSTSGSTMPKLMTPDA
FMTPSTSVPASPGSSVSSLTIVTAMSSSDSGPRATEDLAQSPKLSTDAASSSLNLGTNSS
SPRANSLLISGLAENIQVLPSSNPSMSRDLQAMEPVLLPQASPTRARSPDVISSASTAMS
QDIIPEIASETLPRGLAEARDPLQGLQDSMASAASALHLLSPLDLSGGTSGDGEQRLSST
PSLLETALSQENAVNVVASSCSESGASRSWPAAPDITRETRNSLRDNGLGECSREDLKDM
HMSSPFHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGSRASHRLPVKDWKTSPR
GSPKLKRKSKKDDGDSSQSRHVDNQMSMEVQEELLLLLRNQQRELDELRQSQQELLQRLT
GHMDAVQSSIMAHVEHVLLTQQEQGQRTMERLLAEGHACNQQLQEHMAQQLAHTLSTTVS
NRLDKVLREEMKKSVPQTVTKSLEPLTGQMSNVIAAKLTAVEATLKENVTKVVKSKNTTD
AIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTNEYIQQLETHV
KNRKQREQDARDPVIGQLQQMIDALQTSQDQLATTVTASVRAEVQHQLHMIVGNLQDSIL
SQVQRIVKGEVSQAMKEQQAVVTSSIMQAMRSAASTPVPTAHLDFQAQQASILQLLQQGQ
LNEAFQQALSAADLNLVLYVCETVDSQQVFGQSPCPLHQAVLLSLIQQLSTNLVTRTDLK
ISYLEDAVMNLDHGDPVTRDHMSAVLSQVRQKLFQFLQQDPHSSLSKRARRLLMMLQGLV
NH
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagttccagtatagacatagaaggcgcgactcagcacctcagagacatctta
aaattggaccgacccgcgaactccaccgacagcactgcaggtgagagccagcggaagacc
tcgtgtaatggagagctaaacggcctgctgggaactgacctgattggagcaggagttcga
agtgccgtgatggaaccaacaactcacagctctgacaacatgaatatggcagatactcag
acaatttcgctgactggtgacgatggctcgacctgcattcccatcactgctagcaatgtg
gtaatcgttgccagtcgagactcgagtattgacagtaaagctcgtggaagtaacaaggtg
aaaatccagccaatggcaaaatatgactgggagcacaaatattactatggcaacctaata
gcagtgtctaatgcgtacttggcgtatgccattagaggtgccaataatcactatatgatc
cgggtcctgcggttgggctcgacagagcgcacgctgctgaagggtttcaccggtgccgtc
acagacctggccttcgcccatcttgactccaccctcctgggctgcgtggatgaagccggc
aacatgttcatctggcagctcaccagcgacaacagcaaaatacaagatgaagtggttgtt
catatccggagacccgaagacacgccgctgaactccagccgcaggcttatctggtgcccc
ttcattcccgaggacaatgaggagaacccagaggacagctgccagacgctggcattgcta
catgaagatagagctgaggtttgggaccttgacatcctgcgctctagcaacaccacatgg
cctgtggaggccacagagattaaagagggcttcatcaccattaaagggcacacggcgcgt
atcagcgagggagctctgtctccagatggcaccgtcctcgccacagccagtcacgacggc
tatgtcaaattctggcagatctacattgaaggacaggaccaaccaagatgtcttcatgag
tggcagccacataacggaaggcctctctcctgcctccttttctgtgacaaccataagagg
caggacccggaagtgcctttctggcgattcttaatcacaggagcagatcagaaccaggag
ctgaagatgtggtgcacggtctcgtggacctgtctacagacgatcaagtttagtccggac
ccggcaaactcgaatgtcctacccagtctgaaagccagtctggacctgtctgccgagtgc
ctcatcttaacagatgtgcagagaaaggtcctgtatgtgatggagctccttcaagatcag
gagaaaggccatgctagctttatggcagtctctgagttcttgctcactcaccctgttctg
agctttggcgtccaggatgtcagtcacgctcgcttgcgccacactgaagtcctccctcca
gacgaagagagcgaaagcatgaccacagagggaagccagggacctttggagtcgaaatct
ggaatccagatcaagctttactgtgtgcatacaaagtcccttcaggatgtacagatctgg
ttccagcccaaccagggtgctgcagcctccctgtttttgcctacatgctctggctcccag
gacggctttggctttgcggaccctttgaccgatttgagcatggacgtgttgagctccgat
aaggaatctggcgcaagtggttcgcagactgacttgtgtaaaatcccctctctcccagct
ccagctgacttcctgagcacctccggctcaaccatgcccaaacttatgaccccagatgcc
ttcatgacacccagcacatctgtacccgcctcccctggcagcagtgttagcagtttgact
atagtaacagccatgagcagctcagacagtggtccaagggctacagaggacctcgcccag
agccccaagctgtctacggatgcagccagcagcagcttgaacctcggtactaacagtagc
agcccaagggccaactcgctcctcatttcaggcctggctgaaaatatccaggtgctgccc
tcttcaaatccctccatgtctcgggacctccaggccatggaacctgtgcttctgccccag
gcatcccccacgagagctcgctcccctgatgtaatctcgtcagcctccacagccatgtcg
caagacatcatccctgagattgcctccgagacattgccaaggggcttggctgaggcacgc
gaccccctccaaggccttcaggacagcatggcctccgcggcctccgcgctgcacctgctt
tcaccgctggatctgagtggaggaacatccggtgacggcgagcaaaggcttagcagcacg
ccttctttattggagacggcgctgtcacaggagaacgccgttaacgtggttgcgtcatct
tgctctgaaagcggtgccagccgtagctggcctgcagcacccgatatcacacgcgaaaca
aggaacagcctgcgagataacggcctgggagaatgctctagagaggacttgaaggacatg
cacatgtcatcccccttccacagacgcacctaccacctcacgcagaacgatagccaggat
gccagtgcagagcagagcgatcatgatgatgaggtggccagtctggcatcatcttcagga
aactgtggctctcgagcctctcacaggctgccagtgaaggactggaagacctctcctcgt
ggctcacccaaactcaagcgcaagagcaagaaagacgacggtgattcatcacagtccaga
catgtggataatcagatgagcatggaggtacaggaggagctgctgttgctgcttaggaac
caacagagggagctggatgagctgcggcagagccagcaggagctgttacagaggctcaca
ggccacatggatgctgtccagagctccataatggcccacgtagagcacgtcctgctcacg
caacaagaacagggacaaagaacaatggagcggctgttggcagagggacacgcgtgtaac
cagcagcttcaggagcacatggcacagcagctggctcacaccttgagcaccactgtctca
aatcgcctggacaaagtgttgcgcgaggagatgaagaaatcagttccgcagaccgtaacg
aagagtctggaacccttgactggacagatgagtaacgttattgcagcaaagcttactgca
gtggaagccacattaaaggagaatgtcaccaaagttgttaagtctaagaacactaccgat
gccatcgggcgagccgcagccgaagccatgcaggggcctatacaggcggcttacaaagac
gccttccaaagcattgttctccccgtgtttgagcgtggctgtcagtccatgtttcagcag
ataaatgacagctttaaacaaggaaccaatgagtacattcagcagctggagacgcatgtc
aagaacaggaagcagcgtgagcaagatgctcgggaccctgtaattggtcagctgcagcag
atgattgatgcattgcagacttcccaagaccagctggccaccacagtaacagccagcgtg
cgcgctgaggttcagcaccaactccacatgattgtcggaaatctgcaggattcgatcctg
agccaggtacagcgcatcgtgaagggtgaggtgagccaggccatgaaggagcagcaggcg
gtcgtcacatccagtatcatgcaggccatgcgctcagcggccagcacacccgtccccaca
gcccacctcgacttccaggcgcagcaggccagcatcctgcagctgctgcaacagggccaa
ctcaacgaggctttccagcaggccttgtctgcagctgacctgaacctcgtgctgtacgtg
tgcgagacggtcgactctcagcaggtgtttggccagagcccctgccccttacaccaggcc
gtgctgctctctctcatccagcagctctccaccaacctggttacacgcaccgacctcaag
atcagctatctggaggacgcagtgatgaacctcgatcatggtgacccggtcaccagggac
cacatgagtgctgtgctgtcacaagtacgtcagaagttgttccagttcctgcagcaggac
cctcacagctccctgagcaagcgtgcccgccgcctcctgatgatgctgcagggtcttgtt
aaccactaa
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integrated database retrieval system
