Neoarius graeffei (lesser salmon catfish): 132888042
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Entry
132888042 CDS
T10798
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngra03000
]
132888042 (ctcf)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132888042 (ctcf)
Transcription factors [BR:
ngra03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
132888042 (ctcf)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
132888042 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_ZN142
zf-C2H2_7th_ZNF462
zf-met
Zf-C2H2_ZNF451_C
zf-C2HE
zf-C2H2_6
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
132888042
NCBI-ProteinID:
XP_060779930
LinkDB
All DBs
Position
6:59990863..60000707
Genome browser
AA seq
815 aa
AA seq
DB search
MKYTFMVQVIPMEGGPTEAVVDETGDAFKAKDCKTYQRRREDEEVEAELLQAAGLEVVEQ
PIAEGQVTGQVADAQQQLVEGVVSVNSGVEMMVMDSLDPALLQMKTEVMEGAMSASVGVA
GASHEATVTTVDDTQIITLQVVNMEEQQLGLGELQLVQVPVSAVPVTATTVEELQGTLVD
ATAMPKDGEPVICHTLPLPEGFQVVKVGANGEVETVEQDELPSHEEQSLQQQEEEEVPEP
QNDDPTWAKDPDYAPPVKKAKKTKKSKLRYNTEGEKDMDVSVYDFEEEQQEGLLSEVNAE
KVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAF
RTVTLLRNHLNTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEV
SKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMK
MHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGRKCRYCEAVFHERYALI
QHQKSHKNEKRFKCDQCDYACRQERHMVMHKRTHTGEKPYACSHCEKTFRQKQLLDMHFR
RYHDPNFVPTAFVCTKCGKTFTRRNTMARHAENCCGLESGDGENGAPAKKSRGGRKKKMR
SRKDDDDSDEHGEPDLDEIDEEEEEEEDALDDMEMEVEQAPPTIPVPAPVEPPVKRKRGR
PPKNPPKASPAKNTTVAPTATAIIQVEDEGTGAIENIIVKKEQDGLDSSVAVSADPVVEE
VEATEGEVEAEQLSVPEAAPNGDLTPEMILSMMDR
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacacgtttatggtacaggtgatacccatggaaggaggaccgaccgaagccgta
gtggacgagacgggggacgctttcaaagccaaggattgtaagacgtatcaacggcggcgt
gaggatgaagaggttgaggctgagctcttgcaggctgccggtctagaggtggtggagcag
cccatagccgaaggtcaggtgacgggccaagtggccgacgcgcagcagcagctggtcgaa
ggtgtggtgagcgtaaatagtggtgtcgaaatgatggtgatggactcgttggacccagcc
ctgctgcagatgaagacggaagtgatggagggcgccatgtctgctagtgtgggtgtagct
ggggcatcccacgaggccacagtcaccacagtggatgacacgcagatcattaccctgcaa
gtggtcaatatggaggagcaacaactgggcctgggtgaactacagctagtgcaggtgcct
gtttcagctgtgcctgtcactgccaccactgtagaagagctgcagggaacactggttgat
gctactgccatgcccaaagatggagagcctgtcatctgtcacacactgccgcttccagag
ggcttccaggtcgtgaaagtaggtgccaatggagaagtggagactgtggagcaggacgag
ctccccagccatgaggagcagtctttgcagcagcaggaagaggaggaggttcctgaaccc
caaaatgatgaccccacttgggccaaggatcctgactatgctcctcctgtcaaaaaggcc
aaaaaaacaaagaaaagcaagctgcgctacaacacagagggggagaaggacatggacgtg
tctgtttacgactttgaggaggagcagcaagaaggcctgctctcagaggttaatgcagag
aaggtcgtgggcaacatgaagcctccaaagccaaccaagatcaaaaagaagggtgtgaag
aagacattccagtgcgagttgtgtagctacacctgcccaagacgctccaacctcgaccgt
cacatgaagagccacacggatgagcggccgcacaagtgccatttgtgtgggcgcgccttc
aggacagtcaccttgctgaggaaccatctcaacacacacacaggcaccaggccccacaaa
tgcaccgattgtgacatggcatttgtaactagcggtgagcttgtgcgacaccgtcgctat
aaacatactcatgagaagcccttcaagtgttccatgtgtgactatgctagcgtggaggtc
agcaaactgaagagacacattcgctctcatactggagagcgtccattccagtgcagcctg
tgcagctatgccagcagagacacctacaagctgaagagacacatgagaacccactcaggg
gagaagccgtacgagtgctacatctgtcatgcgcgctttacccagagtggcactatgaag
atgcacatcctgcagaagcatactgagaatgtggccaagttccactgcccccactgtgac
actgtcatcgctcgcaagagtgacttgggtgtgcatctgcgcaagcagcattcctacatc
gagcaaggtaggaagtgccgttactgtgaggctgtgtttcatgagcgctatgctctcatc
cagcaccagaagtcccacaagaacgagaagcgcttcaagtgtgaccagtgtgactacgcc
tgccgacaggagcgtcacatggtgatgcacaagcgcacccacactggggaaaagccatat
gcctgcagccactgtgagaaaactttcagacagaaacaactcctggacatgcattttcgt
cgctaccatgaccccaactttgtgcccactgcctttgtgtgcaccaagtgtggcaagacc
ttcacacgcaggaacaccatggccaggcatgctgagaactgttgtggactggaaagtggt
gatggcgagaatggtgctccagccaagaaaagccgtggtggcagaaagaagaagatgcgc
tccaggaaggatgatgacgacagtgatgagcatggagagcctgacttggatgaaattgac
gaagaggaggaggaggaagaagatgctctggatgatatggagatggaagtggaacaagct
ccaccaaccatccctgtccctgcccccgttgagccacctgtcaagaggaaacgtggccga
cctcccaagaatcctcccaaagcttcccctgctaagaacaccactgttgcacctactgcg
actgccattatccaggtggaggatgagggcacgggagccattgagaacatcatagtaaag
aaagaacaggacggcctggattcttcagtggcagtgtcggcagaccctgtggtggaggag
gttgaagccacagagggagaagtagaggcagagcagctgtctgtccctgaggctgcaccc
aatggagacctcacccctgagatgatcctcagcatgatggaccggtga
DBGET
integrated database retrieval system
