Neoarius graeffei (lesser salmon catfish): 132888863
Help
Entry
132888863 CDS
T10798
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132888863 (col13a1)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132888863 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132888863
NCBI-ProteinID:
XP_060780941
LinkDB
All DBs
Position
7:48828181..48972781
Genome browser
AA seq
673 aa
AA seq
DB search
MEQDTKVSRDAPGGRTCAEHPCESSAWPRRAEVCVALAVCIALCLFSLGVCVLVYLRTSE
LQDRVNSLEKHRAPPQHSAWMFLEQVEPVLLNRLDQMLEEKLASRLPKTRETRDVSHACL
CPPGPPGPPGRAGFPGDKGSMGIPGRMGLKGNTGEKGAPGEPGLSIIGPRGPPGQPGTRG
FPGFPGPIGLDGKPGHNGQKGDMGPPGPKGLRGEPGPKGEKGVCGDYTHRKRRIVHPCAG
GQATQGEPGAQGPPGLPGPPGPPGSPGLTGANGPPGKPGEPGKPGKDLRMLTGMKGEPGV
PGQKGDRGEIGLMGPEGPKGSKGDQGQKGEKGELRSSGVGIKGEPGVPGLPGSKGQKGDQ
GIKGERGSQGQPGPRGPPGATGEPGKMLINNNENDIRNVHLMGPPGLPGPPGLPGAKGEV
GLPGPPGLDGEKGPRGKAGEPGPIGPPGPEGPRGEGGVMGFPGPKGDKGDMGPSGSPGLD
GPTGEKGSPGSPGPIGLLGSMGQKGEAGEKGENGDQVYGPPGPPGPAGPVGPMGSPGLSG
PKGEPGLGIRGEKGSPGQKGDKGDRGHLGLPGAHGLDGKPGPVGLIGPPGIPGPAGPKGE
RGEKGEMGVAGPTGPQGIPGLVGPPGLKGNRGERGKRGNRGAKGDKGDQGAPGLDAPCPL
GDDGLPVPGCWNK
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagacaccaaagtttctcgcgatgctcctggaggaaggacttgcgccgagcat
ccgtgtgagagcagcgcgtggcccaggcgggcggaggtgtgtgtcgcgcttgcggtgtgt
attgcgctctgcctcttctctctcggagtgtgtgtgctggtgtatctgcgcacctcggag
ctacaggacagggtcaacagcttggagaagcacagagcgcctcctcagcactcagcctgg
atgtttctcgagcaggtggaaccagtcctcctgaaccgcctggatcagatgctggaagag
aagttagcgtctcgtctgccgaagaccagagagactcgggatgtttcccacgcctgtctg
tgtccaccaggacctcctggtcctcctggacgagctggctttccgggagacaaaggatca
atgggcattcctggacgaatgggcttaaagggaaacacaggggaaaagggagctccaggg
gagccaggtctatctatcattggcccacgaggacctcctggtcagccaggcactagagga
tttcctggctttccgggtcccattggcttggatggcaagcctggtcacaatggtcaaaaa
ggggacatgggccctcctggtcccaaaggacttcgtggtgaaccaggtccaaaaggggaa
aagggagtgtgtggtgattatacacatcggaaacggcgtattgtccacccgtgtgctgga
ggacaggccacacagggtgagcctggagcacagggaccaccgggccttcctggccctcca
gggcctcctggtagcccaggattgactggtgctaatgggccaccgggaaaacctggagaa
cctggaaaacctggaaaagacctaaggatgttgacaggaatgaagggagaacctggtgta
ccaggacaaaagggtgatcgtggtgagataggattaatgggacctgaaggccccaaggga
tccaaaggggatcaaggacaaaagggtgaaaaaggagaactgaggtcttcaggagttggc
attaaaggagaaccaggagtgccaggactgcctggatccaagggtcaaaaaggtgatcaa
ggcataaagggtgaaagaggatcccagggccaacctggaccaagaggccctccaggtgca
acaggagaaccaggaaaaatgttaatcaacaacaatgagaatgatattcgtaatgtgcat
ctaatgggcccacctggtctaccagggcctcctgggttacctggtgccaagggtgaagtt
ggactccctgggcctcctggtcttgatggggaaaagggtcctcggggaaaagcaggagag
cctggacccattggcccacctggacctgaagggccacgaggagaaggaggagttatgggc
ttccctggacctaaaggggataaaggagacatgggtccatctggatcacctggtttagat
ggccctactggtgaaaaagggtctccagggtctcctggccccattggattactaggctca
atgggtcagaaaggtgaagctggagagaagggggaaaatggagaccaggtgtatggccca
ccaggacctccaggacctgcaggaccagtggggccaatgggatctccaggattgtcaggg
ccaaagggggaaccaggtctgggcataagaggagagaaaggatcacctggacagaaagga
gataaaggagataggggtcatcttggactaccgggggctcatggtttagacggcaagcct
ggtccagtgggtcttataggaccgcctggtatacctggaccagcaggaccaaaaggagag
aggggtgagaaaggagaaatgggagtagcaggaccaacagggcctcaaggcatccctggc
ttagtaggaccaccaggattaaaaggaaaccggggggagaggggcaagagaggcaacagg
ggggccaaaggggataagggagaccaaggagccccaggattagatgccccttgtcctttg
ggtgatgatggtctaccagtaccaggatgttggaataaatga
DBGET
integrated database retrieval system
