Neoarius graeffei (lesser salmon catfish): 132888939
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Entry
132888939 CDS
T10798
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03015
mRNA surveillance pathway
ngra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132888939
09123 Folding, sorting and degradation
03018 RNA degradation
132888939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132888939
03041 Spliceosome [BR:
ngra03041
]
132888939
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132888939
mRNA cycle factors
Stress granule specific factors
132888939
Spliceosome [BR:
ngra03041
]
Complex C
Other components
Complex C specific factors
132888939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
LntA_helical
Motif
Other DBs
NCBI-GeneID:
132888939
NCBI-ProteinID:
XP_060781012
LinkDB
All DBs
Position
7:complement(88150391..88154001)
Genome browser
AA seq
499 aa
AA seq
DB search
MNPDSMMAALYVGDLHPDITEVMLLEMLSPAGPIRSIRLCRDRDTGSSLGYAYVNFHHQA
DAERAMKMFNFELLMGRPIRIMWSQRDPSMRKTGIGNLVIKNLDKSIDSGSLYDLFSVFG
KVLSCKVVEDENGSKGYAYVHFESMEAAELAKKKLNRKLLNDRKVFIEHFKVREQREAEV
GSCSHPFNIYTKNLGDDVDDNQLNTIFSKFGLSLKIVGVCVAGPVVNARVMTDESGKSKS
FGFVSFHRHEDAQRALAEMNGQMLNGRQVIVGRAQTKAERQAELKQKFEQERNLAAMYTI
RQILKPHPYLYWTGAQTIEQQYVQNAPVADSVPAGGNYPAVDTVPAVEKSPAGESAPAVE
YVLVQENAPAVEHVPTGESAPAVEDDVPTYSPAGKRLTLYMLESSPVDEQVRMAYDYMLA
LAEQIHPHLVKKITWMLLEGKNNYEIMNMIGDLKLLHARVHEMDAILKATEAGYKPEALK
MLYNKSKNGKKKKNKRNYY
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagactccatgatggccgcactgtatgtgggtgatctgcaccctgacatcacg
gaggtgatgctgctggagatgttgagccctgcaggacccattcgctccatccgtctctgc
agggacagggacaccggctcctcactcggctatgcttatgtcaactttcaccatcaagct
gatgctgagcgagcgatgaaaatgtttaattttgagctcctgatggggcggccgatacgg
atcatgtggtctcagagggatccatccatgaggaaaaccggcattggaaaccttgtcatc
aaaaacctggacaagtcaattgacagcgggtccctttatgaccttttctccgtctttgga
aaggtcctgtcgtgcaaggtggtagaagatgagaacgggtccaaagggtatgcctatgtc
cacttcgagtctatggaggcagcagagttagcaaagaagaaactgaacagaaaactgctg
aacgaccgtaaagttttcattgagcactttaaggtccgtgagcagcgtgaggctgaggtg
ggctcctgctctcacccattcaacatttacaccaaaaacctgggagacgacgtggacgac
aatcagctgaacaccatcttcagcaagtttggactaagccttaaaattgtcggtgtgtgt
gttgcaggtcctgtggtgaatgcccgcgtcatgacagatgagagcgggaaatccaaaagt
ttcggctttgtcagtttccacaggcacgaggatgcacagagggctctggcagagatgaat
ggacagatgctgaacggcaggcaggtgattgtgggtcgagcgcagacgaaagcagagaga
caggctgaactcaaacagaagtttgaacaggaaaggaacctggctgccatgtatacaatc
agacagatactcaagccccacccatatctgtactggaccggtgcacagaccatcgaacag
caatatgtccagaatgctccagtggcagactccgtgccagctggaggcaactatccagct
gtagacactgtccctgctgtggagaaaagcccagctggagaaagtgctccagctgttgag
tatgttcttgttcaagaaaatgctccagctgttgagcacgttccaactggagaaagtgct
ccagctgttgaggatgatgtacccacatactcaccagctgggaaacggttgactctgtac
atgttggagtcatctccagtagacgaacaggtccggatggcatatgactacatgttagct
ctggctgagcaaatccacccacacctggtgaaaaagatcacctggatgcttctggagggc
aaaaacaactacgaaattatgaacatgatcggagatctcaagctcctgcatgccagagtg
catgaaatggacgctatcctgaaggcgacggaagctggttacaagccggaagccctgaag
atgctctacaacaagagcaagaacggcaagaagaaaaagaataagagaaattattattaa
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