Neoarius graeffei (lesser salmon catfish): 132889132
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Entry
132889132 CDS
T10798
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132889132 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngra03400
]
132889132 (msh6)
DNA repair and recombination proteins [BR:
ngra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132889132 (msh6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
132889132
NCBI-ProteinID:
XP_060781317
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Position
7:complement(17065366..17145927)
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AA seq
1368 aa
AA seq
DB search
MAKQISIVNFLTKSSPVVAKAKSTLCTAEADLSSISKSSSSQIEEAKQTAQKKKPVENPN
KTLAKVGHDKPFGSRATDTNKSSSFTFHAGDLVWAKLEGHPWWPCMIVPQPLSGQLMRGR
GQAQRVHVHFFDEPATRGWVRKKYVREYKGSHSADAKTGGLFFSGKPVIRRAMELADRVL
QDSPEQRLKMPVCMDASDDEVEHEEMMEIEKSTPSDEEMSEEAVQMVNPCRRSPRAASEH
AQKPKRRRIVVASDSESSSDGFKPDQVETSSEDEDEVISDAEETIPESETDSTVKPVKRK
RASEKTSETKNKALPSGIHKRNPVSLAADTKSRLSAFSAPGSFESQDSAAGNLGGTGMWD
HEKLDWLQDGKRKDAQRRCQSDENYDPTTLYVPEDFLNRVTPGMRRWWQLKSEMFDTVLF
YKVGKFYELYHMDAVIGVSELGLIFMKGTWAHSGFPEIGFGRFSDVLVQKGYKVARVEQT
ETPEMMEARCKAMVRPTKFDRVVRREVCRVITRGTQTHSVLDGVPSEAESKYLLSVKEKN
QEENVGKCHTYGVCFIDSSVGRFYVGQFQDDRHCSRLRTLLAHYVPAQVLFEKGNLSAET
QKIFKAALSSAMHESLNAGSQFWDPQKTLKTLADEDYFKESEEEFGTSSGSALPSALKAM
TSESDLLGLTPKEGYELALSALGGCIFYLKKCLVDQELLSMANFQEYVPVDVEIQKSENA
SNLFAQTCQRMVVDGVTLANLEILQNGSTGGTEGTLLEQLDTCCTPFGKRLLRQWLCGPL
CNPASINDRLDALEDLMAVPAQAAEVTELLKKLPDLERLLSKIHSMGTPLKGQDHPDSRA
ILYEEIAYSKRKIADFLSALEGFGTIQEVMSIMESVSVGFQSKLLRQVVILKTRNDEGLF
PNLRPELNRWDTAFDHQKARTTGVITPKAGFDSEYDRALSGIKDCERNLQDYLVRQKKRL
GCQNLSYWGTGRNRYQMEVPDSVSERSIPEEFEVKSTKKGWKRYSTKEIEHMFSELQSWE
DKRDAALKDCMRRLFYNFDKNYRDWQTAVECTSVLDVLLSLSQYSQSGNGVMVKPEIILP
GNGPHSSPFLDLRGSRHPCVTKTYFGDDFIPNNIFIGCPGNEEEESEDNRKALAPCVLVT
GPNMGGKSTLMRQCGLIVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVE
LNETASILLHGTTHSLVLLDELGRGTATYDGTAIASAVVKELSTRICCRTMFSTHYHSLV
EDYAQNCAVKLGHMACMVENECDEDPSQETITFLYKFISGACPKSYGFNAARLADIPEEV
IQSGHCKAREFERSTMALTTFKKLCSFAEDPMANHEQFARLVQMICNL
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcaaatttccattgttaatttccttacaaagtcatcgccagtcgtcgcgaaa
gcaaaatctactctttgcactgccgaagcagatttgtcttcaatttccaaatctagtagt
tcacagattgaggaagctaaacaaaccgcccaaaagaagaagcctgtggaaaacccaaac
aaaactctggctaaagtcggtcatgataaaccgtttggatcaagagctacggatacaaat
aagagctcttcatttaccttccatgcgggtgacctggtatgggcaaaacttgagggacac
ccatggtggccatgcatgatcgtgccccaaccgttgagtgggcagctgatgaggggcaga
ggccaagctcagagagtgcatgttcatttttttgatgagccagcaacgaggggttgggtc
agaaagaagtacgttcgagaatataaaggttcacacagtgctgatgccaaaacaggtggt
ttgttcttcagtggtaagcctgtgattcgcagggcaatggagttggcagatcgtgtgttg
caggacagtcctgaacagagattaaagatgcccgtctgtatggatgcctctgatgacgaa
gtcgagcatgaagaaatgatggagattgaaaaatcaacaccatcagatgaagaaatgtca
gaagaagcggttcagatggtgaatccatgcaggcgttcaccacgcgctgcatcagagcat
gctcagaaacccaaacgccgacgtattgttgtggcctctgacagtgagagctctagtgat
gggttcaagccagatcaggtagaaacgagcagtgaggatgaagatgaggtcatcagtgat
gcagaggaaaccatacctgaatctgaaacggacagtactgtgaaacctgtgaaacggaaa
cgtgcatcagagaaaacttctgaaacaaagaataaagctctaccttcagggatccacaag
cgcaatcctgtgagtcttgcagctgacacaaaatcacgcctgtctgctttttctgctcca
ggcagctttgagagccaggacagtgctgcaggaaacttgggtgggactggcatgtgggac
catgaaaaattggattggttgcaggatggcaaaagaaaagatgctcagaggcggtgtcag
tcagatgagaactatgacccaacaactttatatgtgcctgaagacttccttaacagggtt
acacctggcatgcgtcgatggtggcaactcaaatcagagatgtttgatactgttcttttc
tataaagtaggcaagttttatgagctctaccacatggatgctgtgattggtgtcagtgag
ttggggcttattttcatgaaaggcacctgggcacattctggtttccctgagataggtttt
ggccgtttctctgatgtgctcgtacaaaaaggttacaaggtggcacgtgtggaacagact
gagacccctgaaatgatggaagcacgatgcaaggctatggtgcgtcccactaaatttgac
cgtgtagttcgacgagaggtatgtagagtaatcacccggggcacccagacacacagtgtg
cttgatggtgtgccttctgaggctgagagcaagtacctgctgagtgtgaaagaaaaaaat
caggaggaaaacgttggcaaatgtcacacttatggggtctgcttcattgacagctcagtg
ggtcgcttttatgtaggtcagttccaagatgaccgtcactgttcccgtctgcgtacctta
ctggcacattatgtgcctgcccaggtgctattcgaaaagggtaacttgtcagctgagaca
cagaagatcttcaaggctgctctgtcctcagcaatgcatgagagtctcaatgctggctca
caattctgggatccccagaaaaccctgaaaaccttggcagatgaagactactttaaagaa
agtgaagaagagtttggtacttcttcaggatcagctctccccagtgctctaaaagcaatg
acttctgaaagcgacttgctaggtcttactccaaaagaaggatatgaacttgctctctct
gcacttgggggatgcatattctatctcaaaaaatgtctggtcgatcaagagctgctttcc
atggctaactttcaggaatatgttccagtggatgtggagatacagaagtcagagaatgca
tcaaatttatttgcccaaacatgccagcgcatggtggtggatggagtgacactggccaac
cttgaaattctccagaatggttctactggaggcactgaaggtactctgctggaacagttg
gacacctgttgtactccctttggcaagaggttgctgagacaatggctctgtggtcccctc
tgtaacccagcctccatcaatgatcggctggatgctcttgaagacctaatggctgttcca
gcacaagctgctgaggttacagaactcctgaagaaacttccagaccttgaaaggttactc
agcaaaatccatagtatgggtactcctctgaagggacaggaccacccagacagcagagca
attctttatgaggagattgcctatagcaagcgcaagattgcggacttcctttcagcactg
gaaggattcggaaccatccaggaagtaatgtcaatcatggagtcagtctcagtaggattc
cagtcaaaattgctgcggcaagtagtgatcctaaaaacaagaaatgatgaggggctgttt
cctaatcttagaccagagcttaaccgctgggacacagctttcgaccatcaaaaagcacgt
acaactggtgtgattacacccaaggctggctttgactctgagtatgatcgagctctgagt
gggattaaggactgcgaaagaaatctgcaagactacttggttcgacagaagaagagactt
ggctgccagaatctatcttactggggcacaggacggaaccgctatcaaatggaggttcca
gacagtgtgtctgagaggagcataccagaagaatttgaggtgaagtccacaaaaaagggt
tggaagagatactcaacaaaggagattgagcatatgttctcagagttgcagagttgggaa
gacaaaagggatgctgcactgaaagattgcatgaggagactgttttacaactttgataaa
aactacagagactggcagactgctgtggagtgcacatcagttcttgatgtgctgttgagt
ttgtcccaatacagccagagtgggaatggagtgatggtaaaaccagagattattctgcca
ggtaatggcccccattcttcccctttcctggacctccgcggatcccggcacccctgtgtc
acgaaaacctattttggtgatgacttcatccccaataacatctttattggttgtcctggc
aatgaagaagaggagagtgaggacaataggaaggcactggctccctgtgtacttgtcaca
gggccaaacatgggaggcaagtccaccctaatgaggcagtgtggcctgattgtgattttg
gcacagttgggttgctatgtgccagctgaaagcctgcgcctaacccctgtggaccgagtg
ttcactcgccttggtgcctccgatcgtatcatgtctggagagagtaccttctttgtggaa
cttaatgaaacagccagtatcctcttgcatgggaccactcattcacttgttcttcttgat
gaactgggtaggggtactgccacctatgatggcacggccattgcaagtgcagtggtgaag
gaactgtcgacgaggatctgctgccgaactatgttttccacccactaccactcactggta
gaagactatgctcagaattgtgctgttaaacttggtcatatggcctgcatggtggagaat
gagtgtgatgaggatcctagccaggaaaccatcactttcctgtacaaattcatcagtggt
gcttgtcccaagagctatggatttaatgctgcacgccttgccgacattcccgaagaggtg
attcagtcaggacattgcaaagcccgcgagtttgagaggagtaccatggctctgactacc
tttaagaaactgtgttcatttgctgaagatcctatggctaaccatgaacagtttgccaga
ctggttcagatgatttgcaacctgtaa
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