Neoarius graeffei (lesser salmon catfish): 132890077
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Entry
132890077 CDS
T10798
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
132890077 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ngra01009
]
132890077 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ngra04515
]
132890077 (pcdh20)
Protein phosphatases and associated proteins [BR:
ngra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132890077 (pcdh20)
Cell adhesion molecules [BR:
ngra04515
]
Cadherins
Protocadherins
132890077 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
132890077
NCBI-ProteinID:
XP_060782857
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All DBs
Position
8:complement(24317829..24321351)
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AA seq
838 aa
AA seq
DB search
MNMVCLLQKVLLVASVRQVICHTLLTLSTLEEQPEGSKIGTLSIAYSPPYKLLGRSYLRV
NEETGDVYTTEQRIDRETLCPSQESGYCTTSVDALVGPEQELMKITIIVEDINDNAPYFE
RNEIHLRIPEDASVGTRVLLDDKAQDKDLGSNAEIIYHLEGSEGFFSVAQDSSTLELIVE
RELDRETQNEHCMVLVAVDSGSVPLSTMVSFIVTVLDVDDQCPRFSPDNPRTVSVPGGAT
RGTTVTQVQAIDPDLGSNSQITYSFSPQISHRAKELFHLDRHTGRISIDMNMRLDSLEEH
VLKVVVNSPPCPVEQTQVTVYLQPVLSLKPTVEIKYVAQYRNQTIILRENEPPTLLALLK
LRDISSVQKVLSLEEDSTAFTLKAQAGNYLLSTSKPLDFELCSKYLVTVVISEAQGKHVH
ARKEINVVVEDVNDNTPQFEETYYQVEIEENNKPGISLVQVSASDADSQFFGKVSYRLIH
NTPAIFNIDEVTGVVSVLKPLDREQQGEYILTVLARDDGSPPLEAFSSVSVKVLDQNDNQ
PTFVTPHFIFFISEGIPRLAQVGKIGIIDADEGDNGKVVEVQVLDKHVPFAMDLSQSVLC
CTGEVDREKHEHYELLLLAIDGGSPRRSSTASVTVFVEDVNDNQPQVLLPSSNLSCLTIS
PSIRAGSIITKIYAIDHDSGMNSDITYHIIAREPINPSPFQIDPHSGNITLVQQLVGRNY
GMHHLLIRVSDGGKPAPLQATVWVNVLVSEISKQCHLTTVPSYFPPASEAPLPPKPYNLT
EHCTELPWLLLLCGLGMMVFSVCVFLGTVIICMRQKQLMQKRTHKRDHTKEHEVKHLN
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggtgtgtctgttacagaaagtgcttctcgtggcatctgtcagacaggtcata
tgccacactctcttgactctttcgactctggaggaacagccagaaggaagtaagataggc
accctaagcatagcctactctcctccatacaagctgcttgggagatcgtatttgagagtt
aatgaggaaaccggggatgtgtacacaacagagcagaggattgaccgggagaccttgtgt
ccatcccaggagagtgggtactgtaccacttcagttgatgccctagtgggtcctgaacaa
gaactgatgaagataactattattgtggaggatataaatgacaatgctccttattttgaa
agaaatgaaattcatttaagaattccagaggatgcaagcgtcggaacaagagtgctgttg
gatgataaggctcaggacaaggacttaggcagcaacgcagaaatcatttatcatttagaa
ggctctgaaggattctttagtgtggcacaggacagttctacccttgagctgattgttgaa
agagagctggaccgtgaaactcaaaacgagcactgcatggttcttgttgctgtggacagt
ggctctgtgcctctgagtactatggtgtctttcattgttacggtgctagatgtagacgat
cagtgcccgcggttcagccctgataaccctcgcactgtatcagtgccaggaggagcaacc
cggggaacaacagtgacccaagttcaagccatagacccagacctgggcagcaacagtcag
atcacttactccttcagtccccagatctcacatcgagccaaggaacttttccacttggac
agacacaccggcaggatcagtatagatatgaatatgaggttagacagcttggaggaacat
gtgttaaaagtggttgtgaatagcccaccttgccctgttgagcaaactcaggtaactgta
tatctgcagccagtattgagcctgaagccaactgtcgagatcaagtatgtagcacagtat
agaaaccaaactataatattacgggagaatgagccaccaactctcttggctcttttgaag
ctaagagacatctcaagtgtccaaaaggttctgtccttagaggaagacagcaccgcattc
actttgaaagcgcaagcaggcaactatctactttcaacctcaaaaccactagactttgag
ctgtgtagcaaatatcttgttactgttgttataagtgaagcccaaggaaaacatgtgcat
gcaaggaaagagataaatgtggtagttgaagatgtgaatgataataccccacagtttgag
gagacttactatcaggtggagatagaggaaaacaataagcctggcatctctttagtgcaa
gtcagtgcaagtgatgcagatagccagttctttggcaaagtgtcatacaggctgattcat
aatactcctgctatctttaatattgatgaagtgacaggtgtagtgtctgttttaaagcct
ttggacagagagcaacagggagaatacattctcacagtgctggccagggacgatggctct
cctccattagaggccttttcatctgtgtccgtaaaggtcctagatcagaatgataaccag
ccaacctttgtcacaccacatttcatcttcttcatctctgaaggtattccacgcttagcc
caggttggaaagattggaattatagatgcagatgagggggataatggaaaagtggtggaa
gtacaagtactagacaagcatgttcccttcgccatggacctgtcccagtcagtactttgt
tgtacaggtgaggtggaccgggagaaacatgaacattatgaactgctcctgctggctata
gatggtggcagtcctcggcgctcctccactgcatctgtaactgtttttgtggaggatgta
aatgataaccagccccaggtgctcctgccaagcagcaacctctcctgtttgaccatatcc
cccagcatcagggctggcagcatcatcaccaaaatttatgctattgaccatgactcaggc
atgaattcagatattacttaccacattatagctagggagccaatcaatcccagcccattt
cagattgacccacactcagggaacatcacgctggtgcagcagcttgtgggcagaaactac
ggtatgcatcacctcttaatcagagtcagtgatggaggaaagcctgcacctcttcaggct
actgtatgggttaatgtgttggtcagtgagatatctaagcagtgccacctgaccactgtt
ccatcatattttcccccagcctcagaggccccattgccaccaaaaccttataacttgaca
gagcattgtacagaactgccttggctcctattgctctgtggtctgggcatgatggtgttc
tcagtatgtgtgtttctgggcactgtcataatttgcatgagacaaaagcaattgatgcaa
aaaagaactcataagagagatcacacaaaagaacatgaagtgaagcatttaaattaa
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