Neoarius graeffei (lesser salmon catfish): 132890371
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Entry
132890371 CDS
T10798
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-1-like
KO
K16498
protocadherin delta 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
132890371
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ngra01009
]
132890371
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ngra04515
]
132890371
Protein phosphatases and associated proteins [BR:
ngra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132890371
Cell adhesion molecules [BR:
ngra04515
]
Cadherins
Protocadherins
132890371
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
NnrU
Motif
Other DBs
NCBI-GeneID:
132890371
NCBI-ProteinID:
XP_060783162
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Position
8:complement(502970..663833)
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AA seq
1201 aa
AA seq
DB search
MPHSVMDLVMSSWTSLFLILLFFFITPSLSSIMYHLREEQPPNTLVGSLASDXGLPDSGH
LYKLEVGAPYLRVDGKTGDIFTTEVPIDRETLKDCRNLFEGDPCFLEFEVSITDLMKGSG
PRLIEGRIEIQDENDNTPQFSSPILSISIPENTLMGALFPIPVATDKDTGSNGIADYSLT
TGSDAASLFSLQVAENADEKVPQLIVMGTLDREQRDSYDLNIKVVDGGNPPRYSSALLRI
TITDTNDNVPKFERSHYEGELAENSPVGHSVLQVKANDADLGDNGMVTYAIYQPLTIVQR
LLSIDRNTGIIYVKSPVDREEVSLLKFYVQARDNGPQAKSSKALVTITVKDKNDNAPSIR
IRGFALVAHEDGIANISEDMPVGTPVALVEVTDRDEGENAVVTCVVAGDVPFQLRSASDT
GSRRKYFLQTTTPLDYERVKEYRIEIVAVDSGNPALSSTNSLKVQVTDVNDNAPVFSPSL
YEVEFPEENQPGDKVLDVVATDADSGTNAELTYNIILDSAIKGLFEINRITGEVKVMNQL
DREHRERYEFHVEASDKGVPSMRGTATVVVNVLDRNDNDPKFMLNGYSFSVLENMPALSP
VGMVTVMDVDKGENAEVHLSVEPDNGKFVIQNGTGTILSRISFDREKESTYTFRLKAVDG
GDPPRSSYVGITINVLDENDNAPYVTKPSNSSYKFLPPLTSPDTRVEKVEAEDIDMGLNA
ELDYTIVGGNPHGLFRISPMDGEIMLVKEFTRKHNGLHRLVVKVSDKGKPAKHTIALVHI
FVNETIRNVTLVESLVGHSLYTPLERDIAGDPEYARVQQSNIVYGSLAGITGVILVIVVV
VVIRHRLQKEAKSGYQAGKKESKDLYTPKQGTKSSKGKKGKKGKSPKPAKSLEDDEEASL
QKGLKFNLINDNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQ
DLPAANTFVGTGDSNSTGSDQYSDYSYKTNPQKYSTKQLPHRRVTFSTANQAQDLQDSSQ
HSYYDSGLDESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEIEHPENDLRSLPDVA
MTGNCTRECSEFGHSDSCWMPSPNRNSKISKSASKLSTFVSYQEREPQEPLMANGSPKPM
GEDLGGGATNKMPSIRFMAPYTSAYSTGGEGTKECNMEEIPLSQTAATTPSSQGSKREIY
L
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgccccacagtgtgatggacttggtgatgtcgtcttggacatccctcttcctcatcctc
ctgttcttcttcatcactccatctctcagctccatcatgtaccacctgcgagaggagcag
ccgcccaatacgctcgtcggcagtttagcgtcagatnngggacttcctgattccggtcat
ctgtacaaactggaggtgggcgccccctacctgcgtgtggatgggaagacgggtgatatt
ttcaccacagaagttcccattgaccgtgagacactaaaagactgtcgcaacctgtttgag
ggcgatccctgcttcctggagtttgaggtttccatcacagatctgatgaaaggttccggg
ccgcggctcatcgaaggccggatcgagattcaagatgagaacgataacacgccgcagttc
tcatcacccatcttgtctatatccattcctgaaaacacccttatgggggcgctgttcccc
atccctgtagccaccgataaggacacaggcagtaatggaattgcagattactcactaacg
acgggctccgatgcagcgtctctgttcagcctccaggtggcggaaaatgcggacgagaaa
gtgccacagctgatcgtgatggggactctggaccgcgaacagcgcgactcgtacgatctc
aacattaaagtggtggatggcggaaatcccccacgctacagcagcgccctcctaaggatc
accatcaccgacaccaacgataatgtgcccaaatttgagcgatcgcactacgaaggggaa
cttgctgaaaacagtcccgtgggtcactctgtcctgcaggtgaaggccaatgatgctgac
ctgggagataacggcatggtcacatatgccatctatcagccactgaccatcgtgcagcgc
ctcctcagtatcgaccgaaacaccggcatcatctacgtcaaaagtccagtggaccgtgag
gaagtgagtctgctcaaattctatgtccaggccagagacaacggcccacaagccaagagc
tccaaagccctagtgaccatcacagtgaaggacaagaatgacaacgcaccgtccatcaga
atccgcggatttgccctggtggctcacgaggatgggattgctaacatttctgaggacatg
cctgtgggaactcctgtggctctggtggaagtgacagatcgagatgagggtgaaaatgca
gtggtgacttgtgtggtggcaggagatgtacctttccagcttcgttcagcgtcagacact
ggaagtcggaggaagtatttcctgcagaccacaacaccgctggattatgaacgggttaag
gaatacaggattgaaattgtagctgttgattcagggaacccggctctttctagcaccaac
tcgctaaaggtccaagtaacagatgtgaatgataatgctcccgttttctctccatctctg
tatgaggtggaatttccagaggagaatcagccaggcgataaggttttggatgtagtggcc
accgatgcagacagcggcaccaatgccgagctcacctacaatattatcttagactcagcg
atcaaggggctctttgagatcaaccgtattacgggagaggtcaaagtgatgaaccagtta
gaccgtgaacacagagaacgctacgagtttcatgttgaagcatctgataaaggggttcca
agcatgagaggaaccgcaacagttgtggttaatgtgctcgaccgcaatgacaatgatcca
aagttcatgttaaatggctacagtttctctgtactggaaaacatgcctgccctcagtcca
gtgggaatggtgacggtcatggatgttgataaaggtgagaatgctgaggttcacttatcg
gtggaaccagacaatggcaagtttgtgattcagaacggcacagggactatcctctcgaga
atttcctttgatcgggaaaaggaaagcacctacacattccgtctaaaagctgttgatggt
ggtgatcctcctcgttcctcttacgtgggaattacaataaatgtccttgatgaaaatgat
aatgcgccttacgtcaccaaaccttccaactcctcatacaagttccttccaccactgaca
agccctgatacacgtgtggagaaagtggaagcagaggacattgacatgggattgaatgct
gagttagactacaccattgtgggtggaaaccctcatggacttttccgcatttctccaatg
gatggtgagattatgcttgtcaaagaattcacccggaagcataatggccttcaccgtctg
gtcgtaaaagtcagtgacaagggaaaacctgccaagcacacaatagcgctggtccacatc
tttgtaaacgagacaatcagaaacgtcacactggtggaatcactggttggccacagtctc
tacactcctctggaaagggatattgctggagacccagaatatgcccgcgtccagcagagc
aacatcgtatatggaagccttgcagggattactggggtcatcctggtcattgtggtggtg
gttgttatccggcaccgtctgcagaaggaagccaagagtggataccaagctggaaagaaa
gagtccaaagatctttacacacccaagcaaggaaccaaaagtagcaagggcaaaaagggc
aagaagggcaagtctccaaaaccagcaaagtccttggaggatgatgaggaggcaagtctt
cagaaaggcttaaaattcaatctgattaatgacaatgatagtcccaggattcatctgccc
ctcaattaccctcctggaagccccgatttggggagacactaccggtcaaactcccctttg
ccctccattcagctgcagccacaatccccttctgcttccaaaaagcatcaggctgttcaa
gatcttccggctgcaaacaccttcgtcgggaccggagacagcaactcgaccggctctgat
cagtattcggattacagctacaagaccaaccctcagaaatacagcaccaaacagctgccg
caccgccgtgtgaccttctcaacagccaatcaggcgcaggacctgcaggactcctcccag
cacagttactatgacagtggattggacgaatcagaaacaccaagcagtaaaagttcttca
gggccgaggatcggaccactggcactgcctgaggatcactacgagaggacgactccagat
ggcagcattggagagatcgaacaccccgagaacgatctgaggtcgcttcccgacgtggca
atgacggggaactgtactcgtgagtgtagtgagtttggacactcggattcctgctggatg
ccgtcaccgaaccgcaacagcaaaatctccaagagcgcatcgaaactctccaccttcgtg
tcttaccaggagcgggagcctcaggagccgctaatggccaatggaagtcccaagcccatg
ggggaggaccttgggggtggggccaccaacaaaatgcccagcatccgcttcatggcccct
tatactagtgcctattccacaggtggtgagggaacaaaggagtgcaacatggaggagatc
ccattgagtcaaacagcagcaaccacgccctccagccaggggtccaaaagagagatctac
ctgtga
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