Neoarius graeffei (lesser salmon catfish): 132890408
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Entry
132890408 CDS
T10798
Symbol
pcdh10b
Name
(RefSeq) protocadherin-10b isoform X1
KO
K16499
protocadherin delta 2
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ngra04515
]
132890408 (pcdh10b)
Cell adhesion molecules [BR:
ngra04515
]
Cadherins
Protocadherins
132890408 (pcdh10b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
CDC13_N
Motif
Other DBs
NCBI-GeneID:
132890408
NCBI-ProteinID:
XP_060783210
LinkDB
All DBs
Position
8:5312695..5352352
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AA seq
1055 aa
AA seq
DB search
MEMLVLWLALCLAHRVASQIRYSVPEETERGTFVGNIAEDLGLDLTKLASRRFQTAPGSR
GSPYLDVNVENGALLVRERIDRERVCKQSASCVLHLEVFLEDPLELFRVEVEVTDVNDNA
PSFPESDVTVEISESATPGTRFPLEAAFDPDVGSNGLRTYEITANGHFALDVQTQTDGNK
FAELVLEKPLDREQQAVHRYVLTAVDGGQPARTGTALLVVRVLDSNDNVPTFDRAVYSAS
LAENAPSGTLVIQLNATDSDEGSNGEVVYSFGSHVSSRARELFDVDARTGRIEVRGEVDF
EESSLYQLYVQAKDMGPNAVPAHCKVLVKVTDVNDNAPEIAFSTVTESVSESAAPGTVIA
LLSVTDKDSGDNGRTRVEILGDVPFRLKSEFGNYYTVVTDGPLDREVAETYTVTVTARDG
GAPPLSSSKSVEVRISDENDNAPTFSQPVYDVHVTENNVPGAYIYAVSARDPDAGDNSKV
TYSVLDRDIQGMSVLTYVSVNPENGYLYALRSFDYEQLKEFSFTVEARDAGSPELHSNAT
VHVVVVDQNDNAPTVIAPLGKNGTAREPLPRSAEPGYLVTRIVATDADDGENARLSYSIQ
RGNEDGLFRMDWRTGELRTARRVSAAKRDAQQHQQRRLYELLVEVRDHGQPPLSCSAVVQ
VALVDGLPAAASAEGRGGGGGGGGGERERGGAARAKDASLDLTLILIVALGSVSFVFLLA
MIALAVRCRKDKKLNVYAGCNASCCLCCGRQARSSRGVSSVNGSSKKKQKKQKKLSKSDI
MLVQSANSADVSAHAGVGCGVGSAQVPVEESGSFGSLRRGQNYCYQVCLTPESANTDLLF
LKACGAGASRAPTDTEHSPRGGIHTTYTEQQQPDIISNGSLLSSETKHQRAELSYLVDRP
RRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDATHRGHSSGADLFSNCTEECKALGHSDR
CWMPSFVPTESRQGADYRSNLHVPGMDAVPDSEVFEGDAFTGDQSFSTFGKEPLHTYQHQ
QHLQASTLDTRELHALLSNSRTPYKANYLSRKRIC
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggagatgctcgtgctttggctcgcgctgtgtctggcacacagagtcgcctcacagatt
cgttactcggtaccggaggagacggagcgtggcacgttcgtgggcaacatcgctgaggac
ttggggctggacctgaccaaactggcctcccgccgcttccagacagcaccggggtcacgc
gggagcccgtacttggatgtgaacgtggagaacggcgcgctgttggtgcgagagcgcatc
gaccgggagcgcgtgtgtaagcagagcgcgtcctgtgtgctgcacctggaggtgttcctg
gaggatccgcttgagctcttccgagtggaggtcgaggtgacggacgtgaacgacaacgca
cccagcttcccggagagcgacgtcacggtggagatcagcgagagcgccacgcccgggacg
cgtttcccactggaagcagccttcgacccggatgtgggcagcaacggactgaggacgtac
gagatcacagcaaacggtcacttcgcgctggacgtgcagacgcaaacggacggaaacaag
ttcgcagagctggtgcttgaaaagcctctggacagagagcagcaggcggtgcaccgttac
gtgctcacggcggtggacggcgggcaaccagcgcgcacgggcacagcgctcttggtggtg
cgcgttctcgactcgaatgacaacgtgccaacgtttgaccgggccgtatactcagccagc
ctggccgagaacgcgccctcgggcacgctggtgatccagctgaacgccactgactcggac
gagggttcgaacggagaggtggtttactcattcggcagtcacgtgtcgagccgcgcgcgc
gagctgtttgacgtggacgcgcgcacgggccgcatcgaagtgcgcggagaggtcgacttt
gaggaaagcagcctctatcagctctacgtgcaggccaaggacatggggccaaacgccgtg
cccgcgcactgcaaggtgctcgtgaaagtcacggatgtcaacgataacgcgccggagatc
gccttcagcaccgtgacggagtccgtgagcgagagcgcggcaccgggcaccgtgatcgcg
ctgctcagcgtcaccgacaaggactctggagataacgggcgaacgcgcgtagaaatcctc
ggcgacgtgccattcaggctcaaatcagagtttgggaactactacacggtggtcacggac
ggcccgctggaccgcgaggtcgccgagacgtacacggtgacggtaacggcgcgtgatggg
ggcgcgcctccgctgtcctcgagcaagtccgtagaggtgcgcatctcggacgagaacgac
aacgcgcccaccttctcgcagcccgtttacgacgtgcacgtgacagagaacaacgtgccc
ggggcttacatttacgccgtgagcgcacgggatccagacgcaggcgacaattccaaggtg
acctattcggtcttggaccgtgatatccagggcatgtccgtgctcacgtatgtgtccgtg
aacccagaaaacggttacctgtacgcgctgcgctcattcgactacgagcagctcaaggag
ttcagcttcacggtggaggcgcgggacgcagggagccccgagttgcactcaaacgccacc
gtgcacgtggtcgtagtggatcaaaatgacaacgcgccgactgtgatcgcgcctctgggc
aaaaacgggacagccagagagcctttaccgcgctcagctgaacctggctacttggtcacg
cgtatagtggccacggacgcagatgacggagaaaacgcgcgtctttcgtatagcatccag
cgcgggaacgaggacgggttgttccgcatggactggcgcacgggggagttgcgcacggct
cgcagggtgtctgcggccaaacgggacgcgcagcagcaccaacagagacgcctttacgag
ctgctcgtggaggtgcgcgatcatggccagccgccgctctcgtgcagcgctgtagtccag
gtcgcgctggtggacgggcttccagcggcggcctcagcggagggacgcggaggaggagga
ggagggggaggaggagagcgtgagcgcggcggcgcggcccgggccaaggacgcgagcctt
gacctcaccctcatcctgatcgtcgcgctcggctcggtgtcgttcgtcttcctgcttgcc
atgatcgccctggccgtgcgctgccgcaaggacaagaagctgaacgtgtacgcgggctgc
aacgcgtcctgctgtctgtgctgcgggagacaggctcggtcatcccgcggtgtcagcagc
gtcaacggcagcagcaagaagaaacagaaaaagcagaagaaactcagcaagtcggacatc
atgctggtgcagagcgccaactcggcagacgtgagcgcgcacgccggagtcggctgtggg
gtcgggagcgcgcaggtgcccgttgaagagtccgggagcttcgggtcgctgcgacgcgga
caaaattactgctaccaggtttgcctcactcccgagtccgccaacaccgacctgctcttc
ctgaaggcatgcggagcgggagcgagccgcgcgcccacggacactgagcacagcccacga
ggggggatccacaccacatacacggagcagcagcaacccgacataatctccaacgggagc
cttctgtccagcgagacaaagcaccagcgtgccgagctcagttacctggtggacagaccg
aggcgtgtgaacagttcagccttccaggaggcggacatcgtgagctccaaagacagtgga
cacggagacagtgagcagggagacagcgatcatgatgccacgcatcgcgggcactcttcc
ggagcggatctattttcgaactgcacggaggagtgtaaggcgctgggccactcagaccgc
tgctggatgcccagcttcgtgcccaccgagtctcggcagggcgccgactaccgcagcaac
ctgcatgtgcctggcatggacgccgtgcccgactctgaggtatttgagggtgacgcgttc
acgggcgatcagtcattctccacgttcggcaaagagccgctccacacataccaacaccaa
cagcacctccaagcctccacgctagacaccagagagctccatgcgctcctgtctaactcg
cgcacgccttacaaagccaactatctgtcgcggaaaaggatttgttag
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