Neoarius graeffei (lesser salmon catfish): 132890456
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Entry
132890456 CDS
T10798
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132890456 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132890456 (clp1)
Enzymes [BR:
ngra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
132890456 (clp1)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
132890456 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_16
TniB
AAA_22
MMR_HSR1
AAA_18
CbiA
nSTAND3
Motif
Other DBs
NCBI-GeneID:
132890456
NCBI-ProteinID:
XP_060783292
LinkDB
All DBs
Position
8:13661213..13673106
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AA seq
446 aa
AA seq
DB search
MSTEAPEKAGDEGPSSGGGAGSGGGARFDLEKETELRFEVEAGERVQLELLSGLAEVFGS
ELNRNKKYTFGPGSKIAVFTWQGCSLSLSGKTEVAYVSKDTPMLLYLNTHAALEQMRRQA
ERDNERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTLVELDVGQSSVSVPGTMSALY
IERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSCLAMVFSQRCEVNRKASVGGCI
INTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVE
RSKDCRRETRDDKIREYFYGFRGTSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQD
DTQLKLVPVSPGRDLTHHVLSVSCVEDDAEGGESRNRGILESPVCGFIVVTAVDTQAQVM
TVLAPAPRPLPRHTLLIMDIRFIDLK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgaggcaccggagaaagccggtgatgaaggcccgagctccggaggaggcgcg
gggagcggcggaggcgcgcggtttgacctggagaaggagaccgaactgcggtttgaggtc
gaagccggggagcgggtacaactcgaactgctgtccggtttggccgaggtgtttggctcc
gaactgaaccggaacaagaagtacacattcgggcctggttcaaagatcgccgtgttcacg
tggcagggatgcagcctgtcgcttagcggcaagaccgaggtggcgtacgtctctaaagac
acccctatgctgttgtatctgaacacgcacgctgctttggagcaaatgagacggcaggct
gagagagacaacgagagaggaccgagggtcatggtggtggggccgaccgacgtggggaaa
tccacagtgtgtcgtctgctgctgaactacgcagtgaggctgggcaggaggcccacactc
gtagagctggacgtcggccaaagcagcgtgtctgttccagggacaatgtcagcactgtat
attgaacgtccagcagatgtcgaggaaggcttctccgtccaggctcctctagtcttccac
tttggttccacgacaccagggaccaatatcaaactctataacaagctgacgtcctgtcta
gccatggtgttctcacagcgctgtgaggtgaaccggaaggccagcgtaggaggctgcatc
atcaacacatgtggctgggtgaagggttcaggataccaggcactggtccactgcgcttca
gcattccaggtggacgtggtgctggtcctcgatcaggaacgcctctacaacgagctcaaa
cgggatctgccgcattttgtccgtgtcgtgctgctacccaagtccggcggagtcgtagaa
cgctccaaggactgcagacgggagacacgtgacgataagatccgtgagtatttctatggc
ttccgtggcacttcgttctacccacacgctttcgacgtgcgcttctcggatgtgcgcatc
tacaagatcggcgcgccatccattccggactcgtgtctgccgctgggcatgtcgcaggac
gacacgcagctgaagctggttcctgtgagcccggggcgtgacctcactcaccacgtgctg
agcgttagctgtgtggaggacgacgctgaaggaggagagagccgcaacagagggatttta
gagagtcccgtttgtggcttcattgtggttacggccgtggacactcaggctcaggtgatg
accgtactcgctcctgcacccagaccgctgccgcgccacacgctccttatcatggacatt
cgcttcatagacctcaaatga
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