Neoarius graeffei (lesser salmon catfish): 132890502
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Entry
132890502 CDS
T10798
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ngra04131
]
132890502 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ngra04147
]
132890502 (copa)
Membrane trafficking [BR:
ngra04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
132890502 (copa)
Exosome [BR:
ngra04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
132890502 (copa)
Exosomal proteins of bladder cancer cells
132890502 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_Aladin
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Raffinose_syn
Motif
Other DBs
NCBI-GeneID:
132890502
NCBI-ProteinID:
XP_060783391
LinkDB
All DBs
Position
1:complement(929844..944835)
Genome browser
AA seq
1231 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRLW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETE
VRGITGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPRESDSQNPDAPEGKRSSGLTAVW
VARNRFTVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLVKLRKMM
KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETFDL
EKEMIPEVDPNAELLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGRAGQMAADLDMDAP
GGEGWGEDAELHLDEDGFMDAQEGLGEEGALGKEEGGGWEVEEDLDLPPELDVPAGAGGG
AEGEGFFVPPTKGISPTQMWCNNSQLPVDHILAGSFETAMRLLHDQVGVVQFELLKPLFL
QAFSRGRVSYVGLPSLPCLFSHPLRDGGTTEGRRQRDGQKGGVPAVGLHLRDLIARLQQC
YQMTTAGRFDEAVDKFRSILLSVPLLVLDNKQEIAEAQQLITICKEYIVGLTMETERKKL
PKDTLEQQKRQCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLKNFKTAAGFARRLLELGP
KPEVAQQTRKILAACEKNLTDTHQLNYDPHNPFDLCAASFTPLYRGRPVEKCPLSGACYC
PTYKGQVCRVTQVTEIGKDVIGLRVSPLQFR
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgttaaccaagttcgagaccaaatcggcccgagtgaaagggctgagtttccacccgaag
cggccatggattctcgccagtctgcacaacggcgtcatccagctgtgggattatcgcatg
tgcactctcatcgataagttcgacgaacatgacggcccagtgagagggatcgacttccac
aagcagcagcctctgtttgtctcgggtggagacgattacaaaatcaaggtgtggaactat
aagctccgtcgctgtctcttcactctgcttggacatctggactacatccgcaccaccttc
ttccaccatgagtacccgtggatcctgagtgcttcagatgatcagacgatccgtctgtgg
aactggcagtccaggacctgtgtctgtgtcctgacgggtcataaccactatgtgatgtgt
gctcagttccacccgtcggaggacctggtggtgtcggccagtctggatcagaccgtgcgg
gtgtgggatatctctggtttgaggaagaagaacctgtctccaggcgccgtggaaacagaa
gtgcgtggcatcactggggtggatctgttcggagcgtcggacgctgtggttaaacacgtg
ctggagggtcatgatcgaggggtgaactgggcagcattccatcccagcatgccactgatt
gtgagtggagctgacgaccgtcaggtgaagatctggaggatgaacgagtcgaaggcgtgg
gaactggacacctgtagggggcactacaacaacgtgtcctgcgccgtcttccatccacgc
caggagctcatcctgtccaactccgaggataagagcatccgagtgtgggacatgtccaag
aggaccggcgtccaaaccttccgcagggatcacgaccgcttctgggtgctcggagctcat
cccaacctcaacctgttcgctgctggtcatgacagcgggatgctggtgtttaagttggag
cgtgagcgtcctgcgtacgccgtgtacgggaacatgctgtactacgtcaaggaccgtttc
ctgcgtcagctcgatttcaacagcagcaaagacacagctgtcatgcagctacgcagcggc
tccaagttccccgtcttcagcatgtcgtacaatcctgcggagaacgccgtgctgctgtgt
acgagagccactaatctggagaacagcacgtatgatctgtactccatccctcgagagagc
gactcgcagaaccctgacgctccagaaggaaagcgctcctcaggccttacagcggtgtgg
gtggcccggaatcgcttcaccgtgttggaccgcatgcactcgctgctgatcaagaacctg
aagaacgagattgtgaagaaggtgcaggtgccgagctgcgaggagatcttctacgcagga
acgggttctctgctgctgagggacgcggacggagtcacgctgttcgacgtgcagcagaaa
cgttcactcgctaccgtcaaaatcgctaaagtcaaatacgtggtgtggagcgcagacacc
agccatgtcgccctgctggccaaacacgccattatgatctgcaacaggaagttggagagt
ctgtgtaacatccacgagaacatccgtgtgaagagcggcgcatgggatgagagcggcgtg
tttatttacaccacctccaaccacatcaaatacgccctcacctcaggtgatcatggtata
atccgcaccctggacctgcccatctacgtgacccgtgtgagggggaacagtgtgtactgt
ctggatcgggagtgcaggcctcgcgtcctcaacatcgacccgactgagtaccgcttcaaa
ctcgccctcgttaaccgcaaatacgacgaggtgctgcacatggtgcgtaacgctaagctg
gtgggtcagtccatcattgcgtacctgcagaagaagggctacccggaggtggcgctgcac
ttcgtcaaggatgagaaaacccgcttcagtctggcgctggagtgcggaaacatcgaggtg
gcgctggaagcggcgaaggctctggatgagcgcagctgttgggagcgtctgggcgaggcg
gctctgctgcagggtcatcaccaggtggtggagatgtgctatcagagaaccaagaacttc
gacaagctcaccttcctctacctgatcaccgggaacctggtcaagctccgcaagatgatg
aagatcgctgagatcaggaaggacatgagtggacattatcagggtgctctgtatctgggg
gacgtcagtgagagagtgcgcatcctcaagaactgtggacagaagtcgctggcctacctg
actgcagcaacacatggcatggacgaggaggctgaggctctcaaagagacctttgacctc
gagaaggagatgatccccgaggtcgacccaaacgctgagctcctgcagcctcctcctccc
atcaaccctctggacacaaactggcccctcctcactgtctctaagggcttcttcgaggga
gccatcgctgcaaaaggaagagcaggtcagatggcagccgatctggacatggacgctccc
ggaggagaaggatggggtgaagatgcagagctccacctggatgaagatgggtttatggac
gctcaggagggtcttggtgaggaaggagctctggggaaggaggaaggaggaggatgggag
gtggaggaggatctggatcttccacctgaactggatgtgccagctggtgctggaggtggt
gctgaaggagaaggcttctttgtcccacccactaaaggtattagccccacccagatgtgg
tgtaacaactctcagttgccggttgatcacatcctcgccggatcctttgagaccgccatg
aggctgctgcacgatcaggtgggtgtggtccagttcgagctgttgaagcccctcttcctg
caggcgttctcgcggggacgcgtgtcctacgtggggcttccatctctgccctgtctcttc
tcgcaccccctgagggacgggggcacgaccgagggcaggaggcagagagacgggcagaag
ggtggcgtcccggcagtagggctgcacctgcgtgacctcattgcccgcctgcagcagtgc
taccagatgaccaccgcggggcgcttcgacgaggctgtcgacaaattcaggagcatcctg
ctgtccgtccccctgctggtgctcgataacaaacaggagatcgccgaggcccagcagttg
atcaccatctgtaaagagtacattgtgggtctcaccatggagacggagaggaagaagctt
cctaaagacacactggagcaacagaagagacagtgtgagatggccgcgtacttcacacac
tgtaacctgcagccagtccacatggtgttggtgttgcgcacggcactcaacctcttcttc
aaactgaagaacttcaagacagccgcggggttcgcacgccgcctgctcgagctcggaccc
aaacccgaggtggcgcagcagacgcgtaagatcctggcagcgtgcgagaagaacctgacc
gacacccaccagctcaactacgacccccacaaccccttcgacctgtgcgctgcctccttc
accccgctgtaccgaggacgccccgtggagaagtgcccgctgtctggcgcctgctactgc
cccacctacaaagggcaggtgtgcagggtcacacaggtgactgagatcggtaaggatgtg
atcgggttgcgtgtgagtccactgcagttccgctga
DBGET
integrated database retrieval system
