Neoarius graeffei (lesser salmon catfish): 132890516
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Entry
132890516 CDS
T10798
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132890516 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngra03021
]
132890516 (polr1a)
Enzymes [BR:
ngra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132890516 (polr1a)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
132890516 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
132890516
NCBI-ProteinID:
XP_060783414
LinkDB
All DBs
Position
8:complement(22825630..22885287)
Genome browser
AA seq
1696 aa
AA seq
DB search
MLFSKETPWRRLEGMSFGMYSSEEIRKLSVKGVTNPLFLDNVGNPAPNGLYDLSLGPSDL
KEICTTCMQDFNNCPGHFGHVDLHLPVYNPFLFDKLYMLVRGSCLSCHMLTCPRAAIHLL
LNQLKLLDVGAMKEVCELPIVLNQFLEGSPQASGTEIQDTLEEFSAPIIKDNQRSHRCAP
IKHICEMKGSLITEFWRSHMASRKCPNCSTSKSQIRREHNSKLIVTHSGVKDDSRTNKDD
VHVAKRGYLTPSLARDHVIKVWEKEGFFLKHLFSGLAENSPNGFSPDMFFLDLLMVPPSR
YRPVSRLGDQMFTNGQTVNMQAVIKDNVIIQKLLAHIATEKARTIEGTQTELEESTETEE
PSQMDQTFLAGLPGVTLTDKLYNIWIRLQSHVNVVFDSDMDKLMTEKFPGIRQLLEKKEG
LFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLN
GPDVHPGASMVINEDGSRTILSRTNPTQREAIAKQLLTPSTGQHRMPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRDCFFPQDQYMELVYRGLTDKRGR
VKLLPPALVKPQKLWTGKQVVSTLLLNVIPANHIPLNLTGKAKIPSKAWVKEPPRSVPGY
HPDSMCDSQVVIRNGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTMGVEDILVKPGANKRRKKIIKESVNCGIKALGAAFNLPAAAAENEGRDLWQ
NAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP
KTQFLQPRQFPFLKDNFEVFRKSQCLDDVLAKLDPQAVHRHFKAIKKWKAKHKHSSPRDG
AFLLFSQKKLSKIKAQAEAQGGEFINGRDNTTLQLMESWKTMDESSRVKYLKKTAHCPDP
CLAVYRPDICFGSVSETFESLIESYLSQFNIMQEFHSSSEYVDNERLKHLLHLKWQRALC
EPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASANIKTPMMS
IPVLSNKKALKRVKTLQKKLTRVCLAEVLHKVDVVETLRLEGKRGQKKRIFTITFHFLPP
ERYQQDKLLLPQQILRFMEDRFFFLLLDAIKKLSAKLASINSVDTRKATAKDTGNDAEGS
TNRADDGDEEAEEGRVVDDEANEGDADATDAKRKEKQEEEVDYESEEGEKSGDEDQEEVT
EQPEEEVDSEQLSEERHDNSQPASQQNVDGDTQESMRVNKVLQLSSSIEAYKYDQQKGLW
CEVTLVLPVSKVHFDLTSLVVAQAQNAVIMETKGITRCLLNEVTTKQGPKELVLNTEGIN
MQEMFRHGDVLDLNRLYSNEIHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLV
ADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSYKFLKQATMLGLHDKLNSPSACLVVGK
LVKGGTGLFDLKQPLQ
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgcttttttctaaggaaacaccatggaggcggttggaaggcatgtcattcggcatgtac
tcctccgaggaaataaggaaattgagtgtcaaaggtgtcactaatcctctgttcctggac
aatgttggtaaccctgctcctaacggactctatgatctgtccctgggtccatctgacctg
aaagaaatctgcacaacctgcatgcaggacttcaacaactgcccaggccacttcggtcat
gtcgacttgcacctgcctgtctacaaccctttcttatttgataaattgtacatgcttgta
cgaggttcctgtctgtcgtgccacatgttgacgtgtcctcgggctgccattcacctgctt
ctcaaccaactcaaattattagatgtaggagcgatgaaggaagtctgtgaactcccgatt
gtccttaatcagtttttagaaggtagtccacaagcatcaggtacagaaatccaagacact
ttggaggaatttagtgctcctattataaaagacaaccaaagaagccaccgctgtgcacct
atcaagcatatttgtgagatgaaaggcagcctcattactgaattttggaggagtcacatg
gcatccagaaaatgccccaactgcagcactagcaagtcacagatacgtcgagagcacaac
agcaaactaatcgtcacgcattcgggtgtcaaagatgacagcagaacgaacaaagatgat
gttcacgtggctaaacgtggatatctaactccaagcttggctcgagatcatgtcatcaaa
gtgtgggaaaaagagggtttcttcctgaagcacctgttctcaggcctggcggagaacagt
cctaacggtttcagcccagatatgttcttcttagatttgctcatggttcctccatccagg
taccggcctgtcagtcggctgggagatcagatgtttaccaacggtcagacagtgaacatg
caggcggtgataaaagacaacgtgatcattcagaaactactcgcccacattgcaactgaa
aaagccaggacaatagagggtactcagacagagttggaggagtccactgagacagaagaa
cccagtcagatggaccagacgtttttagccgggctacctggagtcacccttacggacaaa
ctctataacatctggatacgcctgcagagtcacgtcaacgttgtgtttgacagtgatatg
gacaagctgatgaccgaaaagttccccggaatccgccagctcttggagaagaaggaaggt
ctcttcaggaaacatatgatggggaagcgagtggactttgctgctcgctctgtcatctgt
ccagacatgtacatcggaactaatgagattggaatacccatggtgtttgcgactaagctg
acatacccacagccggtgacaccatggaacgtgaaggagttgcggcaggccgtgcttaat
gggcctgatgtgcacccaggagcatctatggttatcaatgaggatggttcacgcaccatt
ctcagccgtaccaaccccacccagagagaggctattgctaagcaactgcttacacccagc
acaggccagcaccgcatgcccatgaagattgttaatcggcacatcaaaaatggagacgtt
ctccttctgaatcgtcagccaacgctgcacagaccatctatccaggctcattgtgcacgc
atcttgcctggagagaaggtgctacggctgcattatgccaattgcaaggcctacaacgct
gactttgatggtgatgagatgaatgcacacttcccgcagagtgagctgggtcgggctgag
gcctacacgcttgtcagcacagaccagcagtacctggtcccaaaggatgggaagcccctg
gctggactaatccaggaccacatggtgtcaggcaccagcatgaccatccgtgactgcttc
ttcccacaagatcagtatatggagctggtctatagaggtctcactgataaaagaggcaga
gtcaagctgcttcctcctgctctcgtcaaacctcagaaactttggactggcaaacaggtc
gtgtccaccctcttgttgaacgtcatcccggcaaaccacatccctctgaacctgacagga
aaggccaagattcctagtaaggcctgggtgaaggagcctcctcgatctgtgccaggctac
catccagactccatgtgtgactctcaggtggtgattcgtaatggtgagctgctagtgggt
gtgctggataaagcacactatgggagctctgcatatggcctggtgcactgctgttatgag
ctatacggaggagagaccagtggcaagcttctaagctgcctggcccgcctttttactgcc
tacctgcagctctatcgtggcttcactatgggtgtggaagacattttggttaaaccagga
gccaataagcgaagaaagaagataatcaaagaatcggtgaattgtggcattaaggcactt
ggggcagcctttaacctgcctgctgctgccgcagaaaacgaaggccgagacctctggcaa
aacgcacatctgaatatcgaccagcgagactttaacatggtggacctcaaattcaaagaa
gaggttaatcaagtcaacaacaacatcaacaaggtgtgcatgccattgggtctgcaccgt
tcattccctgagaacaaccttcagctgatggtgcagtctggagctaaaggttctacggtc
aatacaatgcagatttcgtgcctgctgggtcagattgagctagagggccgtcgtcctccc
ctgatgccttctgggaaatccctgccttgcttccagccttatgagccacaacctcgctcc
ggtggctttgtgactggaaggttcctgaccggaataaaacctccagaattttttttccat
tgtatggctggtcgtgaaggcctggtggacacggctgttaaaactagtcgttctggctat
ctgcaaagatgtgtgataaagcaccttgagggactggtggttcagtatgacttgacggtg
agggacagtgatggcagtgtggtgcagttcctctatggagaggatggcctggacattccc
aaaactcaattcctgcagcctcgtcaattccctttcctcaaagacaactttgaggttttc
agaaaatcacagtgcttggatgatgtgctggctaaactagacccacaggcagttcatcgc
cactttaaggccattaagaagtggaaggctaagcacaagcattcgtctcccagagatggc
gccttcctgctcttctctcagaagaaattgagcaagattaaggctcaggctgaagcccag
ggtggagagttcatcaacgggagagataatactactctacaattgatggagagttggaaa
actatggatgaatccagccgtgtcaagtatctaaagaagacagcccactgcccagatcca
tgtctcgctgtttaccggcctgacatctgtttcggttctgtgtctgaaacgtttgaatcc
ctcatcgagtcctacctcagtcagttcaacatcatgcaggaatttcactcttcatccgaa
tatgttgacaatgagagattaaagcatctgttgcacctgaagtggcagagagcgttgtgt
gagccgggagaggctgtggggctgctggctgctcagagtatcggtgaaccttccactcag
atgactctcaacacctttcactttgcaggcagaggagagatgaacgtcactctgggtatt
cccaggttgcgtgaaattcttatgattgctagcgccaacatcaagacccccatgatgagc
attcctgttttaagcaacaagaaagctttaaaacgagtgaagaccctgcagaagaagctc
acacgtgtgtgtctggcagaggtgttgcacaaagtggatgtggtagagacacttcgactg
gaaggtaaaagaggccagaagaaacgaatcttcaccatcacattccacttccttcctcca
gagcggtaccagcaggataagttgctgcttccccagcagatcctccgcttcatggaagac
agattcttctttttattgcttgacgccatcaagaaactgagtgccaagctggcctctata
aattcagtggacacacgcaaggccacagcgaaagacaccggtaatgatgcagagggctcc
actaatagagcagatgatggagatgaggaagcagaggagggcagagtggtggacgatgag
gcaaatgaaggggacgcagatgccactgacgccaagaggaaggaaaagcaagaggaggag
gttgactatgagagtgaggagggggagaagagtggggatgaagaccaagaagaggtgacg
gaacaaccagaggaagaggtggactcggagcaactatctgaggagaggcatgacaacagc
caacccgccagccaacagaatgtggatggagacacacaggaatcaatgagagtcaacaaa
gtgctgcagctcagctccagcattgaggcctacaaatatgaccagcagaaaggcctgtgg
tgtgaggttaccctggtgctcccagtaagcaaagtgcactttgacctgacctctctggtg
gtagcacaagctcagaacgcagtaatcatggaaacgaaaggtattacgcgttgtttactt
aacgaagtgaccactaagcagggtcccaaggaactggttctgaacaccgagggcatcaac
atgcaggagatgttcaggcatggagatgttctcgacctgaatcgtttatattcaaatgag
atccatgccatggccaacacgtacggtattgaagtggctctgagggtcattgagaaggag
attaaagacgtgtttgctgtttatggtatcgaagtggacccacggcatctctccctagtg
gccgattacatgtgctttgaaggcgtgtacaaacccctcaaccgcttcggcattcagtcc
aacagctccccgttgcaacagatgacctttgagaccagctataagtttttgaaacaagcc
actatgttgggcttgcatgataagttgaattcaccctcagcttgcttggttgtgggaaaa
cttgtgaaaggaggaactgggctctttgacctcaagcagcccttacagtga
DBGET
integrated database retrieval system
