Neoarius graeffei (lesser salmon catfish): 132890606
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Entry
132890606 CDS
T10798
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ngra04515
]
132890606 (pcdh19)
Cell adhesion molecules [BR:
ngra04515
]
Cadherins
Protocadherins
132890606 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Tetraspanin
Motif
Other DBs
NCBI-GeneID:
132890606
NCBI-ProteinID:
XP_060783608
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All DBs
Position
8:complement(38624798..39182467)
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AA seq
1081 aa
AA seq
DB search
MDFLQTILWFLACCSSAGAVFNLKYTVEEELRAGTKIANVTADAKVAGFTLGNRQPFLRV
ISNSEPRWINLSPAGLLLTKQKIDRDAVCRQTPKCIISLEVMSNSMEICVIKIEILDVND
NAPRFPTSHIDIEISENAAPGTRFPLEGASDPDSGSNGVQTYTLSPNDIFGLEIKTRGDG
SKIAELVVEKALDRETQSHYTFEITAEDGGEPPKTGNVQLNIKVIDSNDNNPVFDEAVYT
VNVVENSAINTLVIKLNATDPDEGTNGEVVYSFVNFMSNLTKQMFKIDPKTGVISVNGIL
DHEELRVHEIDVQAKDLGPNSIPAHCKVVVNVIDINDNAPEIKLLSENSEMVEVSENAPL
GYVIALVRVSDSDSGANGKVQCRLQGNVPFRLNEFESFSTLLVDGRLDREQRDMYNLTIL
AEDSGHPPLRSSKSFAVKVTDENDNPPYFTKPHYQAMVLENNVPGAFLLAVSARDPDLGM
NGTVSYEIIKSEVRGMSVESYVTVNSNGEIYGVRAFNHEDTRTFEFKVSAKDGGDPSLTS
NATVRIVVLDVNDNTPVMTTPPLVNGTAEISIPKNAGSGYLVTQIKADDYDEGENGRLTY
SISEGDMAYFEIDQVNGEVWTTKMFGENTKPSYQITVVAHDHGQTSLSASAYIIVYLSPD
LNTHEQIGPGNLSLIFIIALGSIAVILFVTMIFVAVKCKRDNKQIRTYNCRVVEYSYGNQ
KKSSKKKKLSKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQSLPLGCRRSESTF
LNMESQNSRNVAPNHGYHHNFTRQGPQQPDLIINGMPLPETENYSIDPSYVNSRAHLIKS
TSTFKDMEGNSLKDSGHEESDQTDSEHDVQRGHYADTAVNDVLNMTVPPNSCQLSDQDPS
EGFHCQDECRILGHSDRCWMPHVPVPAHVKSPEHSRDIIALSIEATGMDVPHYEDCGTTK
RTFATFGKDGLDEEPKGKRTNEMTTGICSPEDNSGIRMAGNGHEVISPITSPAHIKSPQS
KPATDYNTLKRCDVERIANHSLLRQPEGKDSEPAMCEINTLLQDGQEKESPSSKRLKDIV
L
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggatttcttgcaaacgattctgtggtttctggcgtgctgcagcagcgccggggccgtt
ttcaatctgaaatacacagtggaggaagaactgcgcgcaggaacgaaaatcgccaatgtc
acggcggacgcgaaagtggctggattcacgctggggaatcggcaaccttttttgcgggta
atctccaattccgaaccgcgatggataaacctaagcccggcaggactgctcctcactaag
caaaaaatcgatcgcgacgctgtttgccgacagacgccgaagtgcataatttctctggag
gtaatgtccaactcgatggagatatgcgtgattaaaatcgagatcttggacgtgaacgat
aacgcgccccgatttcccaccagtcatatcgacattgagatctcggaaaacgccgctcca
ggcacgcggtttcccctagagggggcaagcgatccggactcgggaagcaatggcgttcag
acttacacgctctcccccaacgatattttcggcctggagatcaagaccaggggagatgga
tctaaaatagccgagctcgtagtagaaaaggctctggacagggagacacagtctcattat
acgtttgaaatcaccgctgaggacggaggagaaccaccaaagactgggaatgtacagctt
aacatcaaagtaatcgactccaacgataataaccctgtatttgatgaggccgtttacact
gttaatgtggtggagaattctgctataaatacattagtaataaaattgaatgccactgat
ccagatgaaggaacaaacggtgaagttgtgtactcgtttgttaattttatgtccaacctg
acgaagcaaatgttcaaaattgatcccaaaactggtgtcataagcgttaatggaatttta
gaccacgaagaactgcgtgtgcatgaaatagatgttcaagccaaagatctggggccaaat
tcaattccggctcactgcaaagtggttgtcaatgtaatagatatcaatgacaatgcacca
gaaattaagcttttatctgaaaacagtgagatggtagaggtcagtgagaatgcacctctt
ggttatgtcatcgcactggtgagagtttcagacagtgattcaggtgcaaacgggaaagtg
cagtgcagactgcagggcaacgtgcctttcagactcaatgagtttgagagcttctccaca
ttacttgttgatggccgactagacagggagcagagagacatgtacaatcttactatcttg
gctgaggatagtggtcatcccccactgagaagttcaaaatcttttgcagttaaagtaaca
gatgaaaatgacaaccccccttattttacaaagccacattaccaagcaatggtgttggaa
aacaatgtcccaggtgcattcctacttgcagtgtctgctagagatcctgacctgggaatg
aatggcacagtgtcttatgaaatcatcaagtcagaagttcgaggaatgtcagtggagtcg
tatgttactgtaaactcaaatggtgaaatttatggggtcagagcttttaatcatgaagac
acacggacatttgaatttaaggtctctgccaaagatgggggagatccttcattaacaagt
aatgccactgtgcgaattgttgttctggatgtaaatgacaacacgcctgtgatgacaacc
ccaccacttgttaatggcactgcagagatttccatccccaaaaatgctggaagtggttat
ttggttactcaaatcaaggctgatgactacgatgagggagaaaatggaagactgacatat
tccatctcagagggagacatggcatactttgaaattgaccaggttaatggtgaggtgtgg
accacaaaaatgtttggagaaaacaccaagccctcctatcaaataactgttgtggcccat
gaccatggccagacatctttatctgcttctgcatacatcattgtctatctctctccggat
cttaacacacatgagcagattggaccaggaaatctgtccctcatctttatcatcgctttg
ggctccattgctgttattttatttgtcacaatgatctttgttgccgtgaagtgcaaaagg
gacaacaagcaaattcgcacatacaactgcagggtggtggagtactcatatggcaaccag
aagaagtcaagcaagaaaaagaaactgagcaagaatgatatccgcctagtgccacgtgac
gtggaggagacagacaagatgaatgtcgtgagctgctcatccctcacatcctcactcaac
tactttgactaccaccagcagtcactgccactgggctgtagacgctctgagagcaccttt
ctcaacatggaaagccagaactcaagaaatgttgcaccgaaccatggctaccaccacaac
ttcaccagacagggcccacaacagcctgacctcatcatcaatggcatgccactgccagag
acagagaattattccattgaccccagctatgtaaacagcagagcacacctcatcaaaagt
acatcaacatttaaggatatggagggtaacagcctaaaggacagtggtcatgaagaaagt
gaccagacagacagtgagcatgatgtacagaggggccactatgctgacacagctgtgaac
gatgtactcaatatgactgtgcctccgaacagctgccagctatcagatcaagatccctca
gaaggcttccactgccaggacgagtgtcggattctgggtcactcagaccgctgctggatg
ccacatgtgccagtgccagcacatgttaagtcacctgagcacagtcgtgacatcatcgct
ctgtcaattgaggctactggcatggatgtgccacattatgaggactgtggaaccaccaag
aggacttttgccacctttggcaaggacgggctagatgaggagccaaaaggcaagaggaca
aatgagatgaccacaggcatctgcagccctgaagataacagtggcattcgtatggctgga
aatggacatgaggtcataagccccatcacatcaccagcacatattaaaagtccacagtcc
aagccagccactgactacaacacattaaaacgctgtgatgttgagcgcatcgcaaaccat
agtctgctgcgccagccagagggcaaagacagtgagccggccatgtgtgagatcaacaca
ctgctgcaggatggacaggagaaggaatccccaagtagcaagcgcctgaaggacattgtg
ctttaa
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