Neoarius graeffei (lesser salmon catfish): 132890824
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Entry
132890824 CDS
T10798
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
Spliceosome [BR:
ngra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
132890824 (si:ch211-114c17.1)
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_19
HAT_Syf1_CNRKL1_C
TPR_16
TPR_12
TPR_15
TPR_11
Iml2-TPR_39
HrpB1_HrpK
TPR_17
DUF5858
ABC_trans_N
Motif
Other DBs
NCBI-GeneID:
132890824
NCBI-ProteinID:
XP_060784066
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All DBs
Position
8:68212636..68234894
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AA seq
712 aa
AA seq
DB search
MATEGTETFSNNGEFINPSGYEAPEVTNFPQPDLGVTEDMGGTDMADPSLAYSAPPVTEE
EEMEDQEMPVDFERQWKLVNDNPQGFNSWTDLLQYCEQEGHLKASRQALNAFLARYPLCY
GYWKKFADLERRAGNNNKAEEVCVEGLSVIPLSVDLWIHYINLLLGTLNMNLPESTQHIR
SVFEDALASAGWDWHSDHLWDLYAEWEKEQGDLRAMTAVYDRVMRVPTQLYSTHYEKLKT
HLTSNPLQDVLSPEEYEKVKAEYRQNQIQAKKEGSDATADEEEERPPGEDNPANDGKDSE
EAVQKMRELILASREETYQQNEAEVRKRWNYEDAIKRPYFHVKPLDRTQLKAWHTYLDWE
MAEAEAARAVTEGTGVEGQESSEVKEGIAGHRRVQILFERCLIACAFYEEFWDKYVHYLE
PHSVEETRNIYRRACEIHLPYKHSFHLQWAMFEERHGNISEAQRILEGLEKAMPGLAMVR
LRRAGLERRVGRLDKAESLLKEAVEENKDKPHLHAFYSIKLARFLHKLCKNPSRARTVLQ
EAIEISPDNSKLYLNLLDLELSGDLRLNGGVVQQCVSKALAAPLSSDNKILFSQRGLQFA
EDFGTTVQSVLSIYEEHQKLLNDLGPKKRGAENGDGDGPEKMSKMDDGSAAAAASLQAVP
PTVPPVPPPPPVMGGDMSGYGSYGNWYQQQQYGGYGSYSNPWNQYNQYYPPS
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgaaggcacggaaacgtttagcaacaacggggaattcataaacccgtcagga
tatgaagcccctgaggtcactaactttccccagcctgatttaggggtaactgaagacatg
ggaggaacagatatggcagatccatcattagcctatagtgcacctccagtgaccgaagaa
gaagaaatggaggaccaagaaatgccagtggattttgagagacagtggaaactggtgaat
gacaacccacagggttttaacagctggactgatttattacaatattgtgaacaagagggt
catttgaaagcatctcgtcaggccctgaatgcgttcctggcaagatacccactctgctat
ggctactggaagaagtttgcagatttagaaagacgagcaggaaacaacaacaaggctgag
gaggtatgtgtggaaggactgtcagtaatccctctcagtgtggatctgtggatacattac
attaacctactgcttggcacactgaatatgaacctgcccgagtcgacacagcacattcgc
agtgtgtttgaggatgctctggcttcagcaggctgggactggcactcagaccacctgtgg
gacctgtacgcagaatgggagaaagaacagggggacctgagagccatgactgcagtctat
gaccgtgtgatgagagtgcccacccagctctacagcacccactatgaaaagttaaagact
catttaacatcaaatccactccaggatgtcctgagccctgaagaatacgagaaggtgaag
gctgagtacaggcagaatcagattcaggctaagaaagagggatccgatgctacagctgac
gaggaggaagagaggccgcccggggaggacaatcctgcaaacgatggcaaagattcggaa
gaggcagtgcagaaaatgcgggagctgatcttggctagcagagaggaaacgtatcagcag
aatgaggcggaggtcaggaaacgatggaactatgaagatgcgataaagaggccatatttc
catgtgaagcctttggatcggacccagttgaaagcctggcacacgtacctggactgggag
atggctgaagctgaggcagcacgtgcggtcactgaggggacgggtgtggaaggtcaggag
agttcagaggtcaaagagggcatcgctggccataggagggtacagattctgtttgaacgc
tgcctcattgcctgtgcattctatgaggagttctgggataagtatgtgcattatctagag
ccacacagtgtggaggagacacgcaatatatatcgacgagcttgtgagatccacctgcca
tacaaacacagctttcacttgcagtgggccatgtttgaggagagacacggtaatatctct
gaggcgcagcgtatcctagaaggtctagagaaggctatgcctggcctggccatggtgcgg
ctccggagggcggggctagagaggagggtgggtcgtctggataaggcggagtcactgcta
aaggaggcagttgaggagaataaagataagccacaccttcatgccttttactccattaaa
ctggcccgctttcttcacaagttatgcaagaatccatcgcgggctcgcaccgtgctgcaa
gaggccatcgaaatcagtccggacaacagtaagctctacctgaatctgctggacctggag
ctatctggggatctgcggctcaatggaggagtcgtccagcaatgtgtgagcaaagcttta
gctgcacctctctcatcagataataagatcctcttctcccaaagaggcctgcagtttgct
gaggattttgggaccacggtgcaaagtgtgctgagtatctacgaggaacaccagaagctt
ctaaatgatcttggtccaaagaaacgtggagcagagaacggtgatggtgatggtccagag
aaaatgagtaaaatggatgatggctctgctgcagcagcagcatctctacaagcggtcccg
cctactgtgcctcctgttcctcctcctcctccagtgatgggtggagatatgagtgggtat
ggaagttatggcaactggtatcagcaacagcagtatggaggatacggtagctactccaac
ccctggaaccagtacaatcagtactaccctcccagctag
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