Neoarius graeffei (lesser salmon catfish): 132890858
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Entry
132890858 CDS
T10798
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132890858 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngra03000
]
132890858 (cnot4a)
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132890858 (cnot4a)
04121 Ubiquitin system [BR:
ngra04121
]
132890858 (cnot4a)
Enzymes [BR:
ngra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132890858 (cnot4a)
Transcription factors [BR:
ngra03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
132890858 (cnot4a)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132890858 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132890858 (cnot4a)
Ubiquitin system [BR:
ngra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
132890858 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
zf-RING_2
zf-CCCH_2
DZR_2
RDD1
zf-C3HC4
Med7
Torus
Motif
Other DBs
NCBI-GeneID:
132890858
NCBI-ProteinID:
XP_060784126
LinkDB
All DBs
Position
8:complement(70371288..70403710)
Genome browser
AA seq
769 aa
AA seq
DB search
MSRSPELKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKANPNFLQTSTCGGEKSKNKANATQRQNSGGKEGWPLLQGYGKLVNGLPTEHRKS
PPLLDCLTDSDHLTPEEPDSELGTDQNTGLSHFPSVLEPTSPVDKPTEPVSIGNGENIAQ
VPGSDSPSPPPGFSKPSLAVPISVAELAARSPFEGAPAESQSLFSDNSNFRHPNPIPSSL
PSFPSSPQGGSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSAKQQQQEDDLGFDPF
DVTRKALADLIEKELSVQEASPRSPSLLPNGQPRLPPLQHRGLYNSFSLPTHAHTTPTRQ
PWMGLPSRNNFAHLNHITHSHFLDPNCPPQHHGTGLGGITISAENSGSVESINVKEWQDG
LRALLPNININFGGIPNSTSSSSSSSSSSTSSMNHMGVPTGSVGLSHSLSWDGTTSWMDP
AIITGMPASTGSNLDCVQDENPPHWLKSLQALTEIDGPSGSVVSQPRRSGLLDSAVRLPL
HRGNWAPYLPPPSLPPSHFHSPPPGFQTAFRPPAQTTTDLLQSAAMERH
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtagccctgagctgaaggaagaccccatggagtgccctctgtgtatggagcct
ctggagatcgatgacgtcaacttcttcccgtgtacctgcggctaccagatctgccgtttc
tgctggcatcgcatccggacagacgagaacggcctctgtccagcctgcaggaagccgtac
ccggaggatccggctgtgtacaagcccctctcacaggaggagatccagaggataaagaac
gagaagaagcagaagcagaacgagaagaagcagaaagtgacggagaaccggaagcacctg
gccagcgtgcgtgtggtacagcggaacctcgtgttcgtggtgggtctctcacagaggctc
gcggaccctgaggttcttaagaggccagagtattttggaaagttcggcaaaatacataaa
gtggtcatcaataacagtacatcatatgcgggctcacagggtcctagtgccagtgcctat
gttacatacatccgctcagaagatgccctcagagcaatacagtgtgttaataatgtggta
gtcgatggtagaacactcaaggcttctttaggaacaacaaagtactgcagctatttcctc
aaaagtatgcagtgccctaagccggactgcatgtatctgcatgaactgggagatgaggca
gctagttttactaaagaagagatgcaggctgggaaacaccaggaatacgaacaaaaacta
ctccaagatctttacaaagcaaatcccaactttctacaaacttcaacatgtggaggggaa
aaatctaaaaacaaagcaaatgctacacaaagacagaacagtggtggtaaagaaggttgg
cctttattacaaggctatggtaaactagtgaatggtttacctacagaacatcggaagtcc
ccgccccttttagattgtttgacagactcggatcacctgaccccagaagagccagactct
gagctaggaacagatcaaaacacaggactctcgcactttccttcagttttagaacctacc
agtcctgttgataaaccaacagaacctgtaagtatagggaacggagagaatatagcacag
gtcccaggcagtgactccccttcccctccacctgggttttctaagccaagcctggcagtg
cccatcagcgtggcagaactcgcagctcgctcaccgtttgagggagctcctgcagagtct
cagtcgctattctcagacaacagtaacttcagacatccgaaccccatccccagcagcctg
ccctctttccccagctccccacagggtggttctgactggcccatgacccctgaaccccaa
agcctctttacctcagacaccatccctgtgtcctcatccactgactggcaagcagctttc
ggcttcggctcttcggccaagcagcagcagcaggaggatgatctaggcttcgacccgttc
gatgtgacaaggaaagcactggctgacctcattgagaaggagctgtcggtgcaagaagcc
tcaccacgttccccatcactcctccctaatggccagccacgccttcctccactgcagcac
cgaggcctctacaactccttcagcctgcccacacacgcccacaccacccctacacgccag
ccctggatgggcctgccctcgcgcaataactttgcacatttaaaccacatcacacacagc
catttcctagatccaaactgtccaccacaacaccacggcacaggcctcgggggaatcact
atatcagcagaaaacagcggttcagtggaaagcataaacgtgaaagagtggcaggacggc
ctgagagcactccttccaaatatcaacatcaacttcggaggcatcccaaattccacatca
tcctcttcctcttcctcctcttcatccacctccagtatgaaccacatgggggtcccgaca
ggatcagtgggactatcgcacagtctgagctgggatggcacaacgagctggatggaccca
gcaatcatcactggcatgccagcatccaccggcagcaatttggactgtgtgcaggacgaa
aaccctccgcactggctcaagtctctacaagctctgactgagatagatgggccgagcggt
tcagtggtgtctcagcctcgtcgctcaggcctgctggactctgcagttcggcttcctctt
cacagaggcaactgggcaccatacctccctcctccatcactccctcccagccacttccac
tctcctccaccaggcttccagacagccttcagacctccagcgcagacgacaacagacctc
ctacagagcgccgccatggagcgccactag
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