Neoarius graeffei (lesser salmon catfish): 132891684
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Entry
132891684 CDS
T10798
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132891684 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngra03041
]
132891684 (sf3b1)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132891684 (sf3b1)
Spliceosome [BR:
ngra03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132891684 (sf3b1)
Complex B
132891684 (sf3b1)
Complex C
U2 SnRNP specific factors
132891684 (sf3b1)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
132891684 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
132891684
NCBI-ProteinID:
XP_060785484
LinkDB
All DBs
Position
9:41132028..41152721
Genome browser
AA seq
1314 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALIEEGSQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEEDSSTTLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KRRRQKMIISPERHDPFADGGKTPDPKMPARSYMDVMKEQHLSKEEREIRLQMAEKAKSG
DLKAVNDSAASQAAAPKRKRRWDQTADQTPNATPKKVSSWDQADGTVETPGHTPGHTPSN
SRWDETPGRPKGSETPGATPSSRMWEPTPSHTPAGAATPGRDTPGHATPGHGGATSSVRK
NRWDLTPKTDRETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPTSQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYSRVPNDENNPYVRSELEYFL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgctaaaacacacgaagatatcgaggcacagatcctggagatccagggc
atgaaggcggcgctgatcgaagaagggtctcagggtgttggcctcgattctaccggctac
tacgaccaggagatctatggaggaagtgacagtcgatttgctggatatgtcacctctatt
gctgccaatgagcaggaggatgacgatgaggaagactcttctacaactctgcttggccag
aagaaaccggggtatcatgctccggtggcaatactcaattccattcctcagtccgatgag
cagtatgatccttttgccgagcaccggcctcagaagatctcagatcgtgaagatgagtac
aagagacggaggcaaaagatgatcatctctcctgagcgtcatgatccttttgcagatggg
ggcaaaacgccagatcccaagatgcctgccaggtcatatatggatgtgatgaaggagcag
catctttctaaagaagagagagaaatcaggctgcagatggcagaaaaggcaaaatcaggt
gacctgaaagcagtcaatgactctgctgcgtctcaagctgctgctcccaaacgcaagcgt
cggtgggaccagactgctgaccagaccccaaacgctactccaaaaaaagtgtccagctgg
gatcaggcagatggcacagtagagacaccaggacatacacctggacacacaccttcaaac
agtcgctgggatgagacacctggtcgtcccaagggtagcgagactcctggagccaccccc
agttcacgcatgtgggaacccacacccagccacactcctgctggcgctgcaactcctggc
cgagatactcctgggcacgccacacccggccatggaggtgccacgtcaagcgtgcgcaaa
aaccgctgggacctgacaccaaagacagacagagagacacctggccatggcagtggctgg
gctgagactcctcgtacagacagaggggatgagtctgtaggagagaccccaactcctgga
gcaagcaaaagaaagtcccgttgggatgagactcctaccagtcagatgggctcctccacc
cctctgctcacccctggaaagacccctattggcacaccagctatgaatatggccacaccc
actccaggtcatttgatgagcatgactcctgagcagcttcaagcatggcgctgggagaga
gagattgatgaacgaaaccgcccattgactgatgaggagctggacgccatgtttccagaa
ggctacaaggtgctgcccccaccagcaggctacgtgcccatccgcactcctgcccgtaag
ttagctgccaccccaacacccatcggcggcatgactggcttccacatgcaagctgaagac
cgaaccaccaaacagatgaatgaccagccatctggtaacctgcctttcctaaaaccagat
gacatccagtactttgacaaacttctggtggaggtggacgagtccactctgagtccagag
gagcagaaggagcgcaaaatcatgaagctgctgcttaaaataaaaaatggcacccctccc
atgaggaaggctgctctcaggcaaatcacagacaaggccagggaatttggtgctggacct
cttttcaatcagattctgcccctgcttatgtctccaactcttgaagatcaggagcgtcat
ctgttggtgaaggtcattgaccgcatcttgtacaaactggatgacctggttcgaccttat
gtccacaagatccttgtggtgatcgaacccttgttgattgatgaagattactatgctaga
gtagagggtagagagataatctccaatttggcaaaggctgctggtctggccacaatgatc
tccacaatgaggcctgatattgacaacatggacgagtatgtgagaaacacaacagctcgt
gcctttgctgttgtggcatctgctttgggtattccctccctcctgcctttcctcaaagct
gtgtgtaagagcaagaagtcgtggcaggctcgacacacaggcattaaaattgtgcagcag
attgccatcctcatgggttgtgccatcttgcctcatctccgcagcttggtggagattatt
gaacatggtctcgtcgatgaacagcagaaagtgcgaaccatcagtgctttggccattgct
gctcttgccgaggctgccacaccctatggtatcgagtcttttgactctgtgctcaagcct
ctttggaagggtatcagacagcaccgaggcaagggtttggctgctttcttaaaagctatt
gggtacctgattccgcttatggatgctgagtatgccaactactatacaagggaagtgatg
ctgatcctcattcgagagttccagtctccagatgaggaaatgaagaagattgtcctgaag
gtggtgaagcagtgctgtgggacagatggtgtggaggccaattacatcaaaacagagatt
ctgccccctttctttaaacacttctggcagcaccgtatggccttggacagacgtaactac
agacagttggtagacactacagtagagctggccaacaaagttggtgcagcagaaatcatc
tcaagaattgtggacgacttgaaggatgaagctgagcagtacagaaagatggtgatggaa
acgatagagaagatcatgggtaacttgggtgcagcagatattgaccacaaactagaggag
cagcttattgatggcatcttgtatgctttccaagaacagaccactgaggactctgtgatg
ctgaatggttttggaacagtggtgaatgctctgggcaagcgagttaagccatacctgcct
cagatctgtggtactgtcctgtggcgtctcaacaataagtcggccaaagtccgtcagcag
gctgctgacctcatttctcgcacagctgtggttatgaagacttgtcaagaggagaagctg
atgggtcatttgggtgtagtgctgtatgagtacctgggagaggaataccctgaagtgctt
ggaagcatccttggagctcttaaagctattgttaatgtcattggtatgcacaagatgacg
cctccaattaaggatttacttcctcgattgacaccaatcctgaaaaacagacatgaaaag
gtgcaagaaaactgcattgatctcgtgggcagaattgctgacagaggtgcagagtacgtg
tctgccagggagtggatgcgaatctgtttcgaactgctggagctgctgaaagctcacaag
aaagcaatccgccgagccacagtcaacacttttggctacattgctaaggcaatcggacct
catgatgtgcttgctacactgcttaacaacttgaaggttcaggagcgtcaaaacagagtc
tgtacaacagtagcgatagccatcgtggcagaaacatgctcacccttcaccgtactccca
gcactgatgaacgagtaccgcgtacctgaactgaatgttcagaatggtgtgctcaaatcc
ctctccttcttatttgaatatattggtgaaatgggcaaggattacatctatgctgtcacc
ccattactggaggatgctctgatggacagagaccttgtgcacaggcagacagcctgtgct
gtcgtgcaacatatgtctctcggtgtgtacgggttcggttgtgaggactccctcaaccac
ttgctcaactacgtttggcctaatgtttttgaaacatcaccacatgttatccaagccgta
atgggagcccttgagggacttcgtgtggctatcggaccatgccggatgttacagtattgc
ctgcagggtttgttccatccagcacggaaggttcgtgatgtgtactggaagatttataat
tccatctacattggctcccaggatgcgctgattgcacattattcccgtgtccccaatgat
gagaataacccatatgtccgctctgagctggagtactttctgtga
DBGET
integrated database retrieval system