KEGG   Neoarius graeffei (lesser salmon catfish): 132891684
Entry
132891684         CDS       T10798                                 
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
ngra  Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ngra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    132891684 (sf3b1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ngra03041]
    132891684 (sf3b1)
   03036 Chromosome and associated proteins [BR:ngra03036]
    132891684 (sf3b1)
Spliceosome [BR:ngra03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    132891684 (sf3b1)
 Complex B
    132891684 (sf3b1)
 Complex C
   U2 SnRNP specific factors
    132891684 (sf3b1)
Chromosome and associated proteins [BR:ngra03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    132891684 (sf3b1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298
Other DBs
NCBI-GeneID: 132891684
NCBI-ProteinID: XP_060785484
LinkDB
Position
9:41132028..41152721
AA seq 1314 aa
MAKIAKTHEDIEAQILEIQGMKAALIEEGSQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEEDSSTTLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KRRRQKMIISPERHDPFADGGKTPDPKMPARSYMDVMKEQHLSKEEREIRLQMAEKAKSG
DLKAVNDSAASQAAAPKRKRRWDQTADQTPNATPKKVSSWDQADGTVETPGHTPGHTPSN
SRWDETPGRPKGSETPGATPSSRMWEPTPSHTPAGAATPGRDTPGHATPGHGGATSSVRK
NRWDLTPKTDRETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPTSQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYSRVPNDENNPYVRSELEYFL
NT seq 3945 nt   +upstreamnt  +downstreamnt
atggcgaagatcgctaaaacacacgaagatatcgaggcacagatcctggagatccagggc
atgaaggcggcgctgatcgaagaagggtctcagggtgttggcctcgattctaccggctac
tacgaccaggagatctatggaggaagtgacagtcgatttgctggatatgtcacctctatt
gctgccaatgagcaggaggatgacgatgaggaagactcttctacaactctgcttggccag
aagaaaccggggtatcatgctccggtggcaatactcaattccattcctcagtccgatgag
cagtatgatccttttgccgagcaccggcctcagaagatctcagatcgtgaagatgagtac
aagagacggaggcaaaagatgatcatctctcctgagcgtcatgatccttttgcagatggg
ggcaaaacgccagatcccaagatgcctgccaggtcatatatggatgtgatgaaggagcag
catctttctaaagaagagagagaaatcaggctgcagatggcagaaaaggcaaaatcaggt
gacctgaaagcagtcaatgactctgctgcgtctcaagctgctgctcccaaacgcaagcgt
cggtgggaccagactgctgaccagaccccaaacgctactccaaaaaaagtgtccagctgg
gatcaggcagatggcacagtagagacaccaggacatacacctggacacacaccttcaaac
agtcgctgggatgagacacctggtcgtcccaagggtagcgagactcctggagccaccccc
agttcacgcatgtgggaacccacacccagccacactcctgctggcgctgcaactcctggc
cgagatactcctgggcacgccacacccggccatggaggtgccacgtcaagcgtgcgcaaa
aaccgctgggacctgacaccaaagacagacagagagacacctggccatggcagtggctgg
gctgagactcctcgtacagacagaggggatgagtctgtaggagagaccccaactcctgga
gcaagcaaaagaaagtcccgttgggatgagactcctaccagtcagatgggctcctccacc
cctctgctcacccctggaaagacccctattggcacaccagctatgaatatggccacaccc
actccaggtcatttgatgagcatgactcctgagcagcttcaagcatggcgctgggagaga
gagattgatgaacgaaaccgcccattgactgatgaggagctggacgccatgtttccagaa
ggctacaaggtgctgcccccaccagcaggctacgtgcccatccgcactcctgcccgtaag
ttagctgccaccccaacacccatcggcggcatgactggcttccacatgcaagctgaagac
cgaaccaccaaacagatgaatgaccagccatctggtaacctgcctttcctaaaaccagat
gacatccagtactttgacaaacttctggtggaggtggacgagtccactctgagtccagag
gagcagaaggagcgcaaaatcatgaagctgctgcttaaaataaaaaatggcacccctccc
atgaggaaggctgctctcaggcaaatcacagacaaggccagggaatttggtgctggacct
cttttcaatcagattctgcccctgcttatgtctccaactcttgaagatcaggagcgtcat
ctgttggtgaaggtcattgaccgcatcttgtacaaactggatgacctggttcgaccttat
gtccacaagatccttgtggtgatcgaacccttgttgattgatgaagattactatgctaga
gtagagggtagagagataatctccaatttggcaaaggctgctggtctggccacaatgatc
tccacaatgaggcctgatattgacaacatggacgagtatgtgagaaacacaacagctcgt
gcctttgctgttgtggcatctgctttgggtattccctccctcctgcctttcctcaaagct
gtgtgtaagagcaagaagtcgtggcaggctcgacacacaggcattaaaattgtgcagcag
attgccatcctcatgggttgtgccatcttgcctcatctccgcagcttggtggagattatt
gaacatggtctcgtcgatgaacagcagaaagtgcgaaccatcagtgctttggccattgct
gctcttgccgaggctgccacaccctatggtatcgagtcttttgactctgtgctcaagcct
ctttggaagggtatcagacagcaccgaggcaagggtttggctgctttcttaaaagctatt
gggtacctgattccgcttatggatgctgagtatgccaactactatacaagggaagtgatg
ctgatcctcattcgagagttccagtctccagatgaggaaatgaagaagattgtcctgaag
gtggtgaagcagtgctgtgggacagatggtgtggaggccaattacatcaaaacagagatt
ctgccccctttctttaaacacttctggcagcaccgtatggccttggacagacgtaactac
agacagttggtagacactacagtagagctggccaacaaagttggtgcagcagaaatcatc
tcaagaattgtggacgacttgaaggatgaagctgagcagtacagaaagatggtgatggaa
acgatagagaagatcatgggtaacttgggtgcagcagatattgaccacaaactagaggag
cagcttattgatggcatcttgtatgctttccaagaacagaccactgaggactctgtgatg
ctgaatggttttggaacagtggtgaatgctctgggcaagcgagttaagccatacctgcct
cagatctgtggtactgtcctgtggcgtctcaacaataagtcggccaaagtccgtcagcag
gctgctgacctcatttctcgcacagctgtggttatgaagacttgtcaagaggagaagctg
atgggtcatttgggtgtagtgctgtatgagtacctgggagaggaataccctgaagtgctt
ggaagcatccttggagctcttaaagctattgttaatgtcattggtatgcacaagatgacg
cctccaattaaggatttacttcctcgattgacaccaatcctgaaaaacagacatgaaaag
gtgcaagaaaactgcattgatctcgtgggcagaattgctgacagaggtgcagagtacgtg
tctgccagggagtggatgcgaatctgtttcgaactgctggagctgctgaaagctcacaag
aaagcaatccgccgagccacagtcaacacttttggctacattgctaaggcaatcggacct
catgatgtgcttgctacactgcttaacaacttgaaggttcaggagcgtcaaaacagagtc
tgtacaacagtagcgatagccatcgtggcagaaacatgctcacccttcaccgtactccca
gcactgatgaacgagtaccgcgtacctgaactgaatgttcagaatggtgtgctcaaatcc
ctctccttcttatttgaatatattggtgaaatgggcaaggattacatctatgctgtcacc
ccattactggaggatgctctgatggacagagaccttgtgcacaggcagacagcctgtgct
gtcgtgcaacatatgtctctcggtgtgtacgggttcggttgtgaggactccctcaaccac
ttgctcaactacgtttggcctaatgtttttgaaacatcaccacatgttatccaagccgta
atgggagcccttgagggacttcgtgtggctatcggaccatgccggatgttacagtattgc
ctgcagggtttgttccatccagcacggaaggttcgtgatgtgtactggaagatttataat
tccatctacattggctcccaggatgcgctgattgcacattattcccgtgtccccaatgat
gagaataacccatatgtccgctctgagctggagtactttctgtga

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