KEGG   Neoarius graeffei (lesser salmon catfish): 132891766
Entry
132891766         CDS       T10798                                 
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
ngra  Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04382  Cornified envelope formation
ngra04510  Focal adhesion
ngra04512  ECM-receptor interaction
ngra04518  Integrin signaling
ngra04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ngra00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    132891766 (col4a2)
   04518 Integrin signaling
    132891766 (col4a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    132891766 (col4a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    132891766 (col4a2)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    132891766 (col4a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ngra04147]
    132891766 (col4a2)
   00536 Glycosaminoglycan binding proteins [BR:ngra00536]
    132891766 (col4a2)
Exosome [BR:ngra04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   132891766 (col4a2)
Glycosaminoglycan binding proteins [BR:ngra00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   132891766 (col4a2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 132891766
NCBI-ProteinID: XP_060785663
LinkDB
Position
9:48910205..49042632
AA seq 1672 aa
MKCKLRMEGVMQTQHQGRVKFLRVLLICLVVLVLTSEVNAGGKKHSGICGGRDCSGGCQC
FPEKGARGQPGPLGPQGPGGPRGRVGDPGLQGRKGEKGILGEAGITGPKGAEGMIGSPGF
PGADGIPGHPGQQGPRGKPGADGCNGTRGDSGIPGLDGISGVAGEKGQPGRKGEKGDSLE
ISVYMERFRGETGLPGYPGPTGPPGSRGYQGRPGLIGAQGEKGYRGPPGPKGNATITHKG
DKGEQGEVGDPGLPGDDETELYHPVHDVTGEKGIKGEPGDLGFYIKGEKGVRGFVGERGS
PGRDGLPGEKGENGDVGYQGRSGSKGEPGEAGELIYTNGFTGVGPPGPPGERGSPGNKGN
KGVQGPPGPDAQTQLLELFGSFGQKGEKGMKGATGEPGIPASVPGSPGLDGKPGPPGPPG
PKGSWSVVYKGPIGPDGGPGNAGAKGQKGDHGHCECTLQTSLPGPPGPAGNQGDPGTVGE
WGQQGDQGDQGPRGLTGLHGFPGPQGLPGLKGSKGDRIEVTEKGSPGERGDPGRPGEQGD
QGRPGTNGIDGAPGFRGLPGEKPVGERGEKGYPGRPGPPGPPGLEGVPGQVIDAPKGVKG
IPGDAGLNGYDGIRGPPGTSGDCRLQGEGGKWITAGDCAILSGPPGETGPSGPPGLEGMP
GLPGPKGFTGDRGNIGAKGEQGDQGIGGSPGNTGFIGPRGDIGSTGPKGVKGSSGIPGRP
GLDGDSGQKGPNGEALGASPGPPGERGPPGQLGIKGPPGNPGTSGYPGMEGMPGMIGIKG
ESGPPGLQGETGSSGLPGTFGFPGNPGQTGHPGPPGHTGLPGLRGETGNRGDGGPPGSIG
VKGVTGEPGSDGRPGDYGARGDPGGTGYVGRTGLSGPKGVKGYAGMTGFPGMTGKPGLKG
RPGQQGVVGVPGRQGEKGGMGQQGQKGERGVMGPPGNMPMTEMIRMKAVMKGAKGDHGHQ
GHPGFTGPRGTKGREGFPGKDGSHGLPGLPSNLKGLKGQPGAQGLPGQKGMPGPTGFPGI
HGFFGPSGPRGDKGSPGAYGATGNVGSKGIKGDQGDIIDLPGPTGSRGETGLPGPLGDNG
YPGEPGIRGSSGFDGIKGSKGAHGEPGRQGPSGADGLKGVPGDQGSKGWPGAPGQAGVPG
RPGHPGQIGFPGLDGISGLYGLKGQKGPQGVAGLDNWGIPGEDGQKGETGDAGIPNTETG
APGAHGFKGSTGDRGDYGEPGPPGDQGPPGDQGIPGRKGPSGDTGLLGQKGLPGFPGATG
LPGFPSPFGAKGDRGIQGNIGHSGPKGLQGDIGDKGFPGQFGVPGEKGIKGPMGTMGVPG
PRGSQGDRGLSGPKGEPGPPGPPGPHGAKGLPPTPVKVPGERGPPGALGIQGLQGARGEI
GSMGPPGDPGYVGPQGQKGMPGVPGIPGTPGDRGDVGPMGHRGLQGLEGDPGRTGIPGPT
GMPGRSVSVGYLLVKHSQSEHTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLR
RFNTIPFLYCNPGDICYYASRNDKSYWLSTTAPIPMMPVEESEIKPYISRCSVCEAPSVA
IAVHSQDTTIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECN
GAKGTCHYFSNKHSFWLTSIDQPFHSFPESETLKAGQLLSRISRCQVCMKNL
NT seq 5019 nt   +upstreamnt  +downstreamnt
atgaaatgtaaactgcggatggagggagtgatgcagacacagcaccaggggagagtgaaa
ttcctaagggttcttttgatttgtctcgtcgtccttgtcctgacgtcagaagttaacgca
ggtggtaagaagcacagtgggatatgtgggggcagagactgcagcggtgggtgtcagtgc
tttcctgagaaaggtgcaaggggccagccaggtcctcttggccctcagggcccgggaggg
cctcgaggacgtgtaggtgaccctggcctgcaaggtcgtaagggagagaagggtatcctg
ggtgaggcaggcatcacaggaccgaaaggggctgagggaatgataggaagtccagggttt
ccaggagcagatggtattccaggtcacccagggcaacaaggtcctcgaggaaaacctggt
gctgatggctgtaatggaacccggggagattctggaataccgggcctggacggaattagt
ggtgtggctggagaaaaaggtcagccaggaaggaagggtgagaaaggggactccctggaa
attagcgtttatatggagagatttcggggcgagacaggacttccaggatatccagggcct
acaggccctcctggaagcagagggtatcaaggaagaccaggtctcataggtgctcagggc
gaaaagggttatagaggacctccaggaccaaagggcaatgcaactataacccataaagga
gacaaaggagaacagggggaagttggggatccagggctaccaggggatgatgagacggag
ttgtatcaccccgttcatgatgtcacaggtgaaaaaggtatcaaaggtgaaccaggagat
ttggggttttatatcaaaggagagaaaggagttcgaggatttgttggggaacggggctct
ccaggaagagacggattgccaggagaaaagggtgaaaatggggatgtaggttatcaaggg
cggtcaggaagcaagggggaaccaggagaagcaggagagctgatctatacaaatggattc
actggagttggcccaccaggtcctccaggagaacgtgggtcaccaggaaataaaggaaat
aaaggagtacagggtccccctggaccagatgctcagacacagctattagagttatttggc
tcttttggacaaaaaggggaaaaggggatgaaaggtgccactggggaacctggtatccca
gcctcagtgcctggatctcctggcttggatggcaaacctggaccacctgggccacctgga
ccaaagggatcatggagtgtggtttacaaaggacctatagggccagatggaggtccagga
aatgctggagcaaaaggacaaaaaggtgaccatggacattgtgagtgcactttgcaaacc
tcccttcctggaccacctggcccagctggcaatcagggtgaccctggcacagtgggcgag
tggggtcagcagggtgatcaaggagaccagggacccagaggcttaactggtctgcacggc
tttcctgggccacaagggctgcctggacttaaaggctctaagggagatagaatagaggtt
acagagaaaggatcacctggagaacgaggagacccagggagaccaggcgaacaaggagat
cagggcagacctgggactaatggaatagatggtgcccctggatttcgtggtcttcctgga
gaaaagccagttggtgagcgtggagagaagggttacccaggcaggccaggtccaccaggt
ccaccaggactagaaggggtaccaggtcaagtaattgatgcacctaagggtgttaagggt
atacctggtgatgcaggattaaatggttatgatggaatcagaggtccaccgggtacttca
ggagactgtaggctacaaggagaaggaggcaaatggattacagcaggggattgtgcaatt
ttatctggacccccaggagagacaggaccctcaggacctcctggattggagggaatgcca
ggactacctgggcccaaaggatttacaggcgatagaggcaatataggagctaaaggagaa
caaggagaccagggcattggaggctcacctggaaacacaggttttattgggcctcgtgga
gacataggcagtactggaccaaaaggtgtcaaaggttcttctggcatcccaggtaggcca
gggcttgatggtgattctggacaaaagggtcctaatggtgaagctttaggagcatctcca
ggacccccaggtgaacgaggaccaccaggacagctcgggataaaaggtccccctggaaat
cctggcacaagcggatacccaggcatggagggaatgcctgggatgattgggatcaaaggt
gaatcaggtcccccaggattacagggggaaacaggaagctctggactaccaggaacattt
ggcttccctgggaaccctggtcagacaggacaccctggacctccaggccacactggacta
ccagggctgaggggagaaacaggcaatcgaggagatggtggtcccccagggtccatagga
gtgaagggtgtcacaggagaaccaggaagcgatggtaggccaggagattatggagcacga
ggggatccaggaggcactggatatgttgggcgaactggtctttctggacctaaaggtgtg
aaagggtatgcaggcatgacaggtttcccaggaatgacaggaaagcctggtctaaagggc
cgtccaggacagcaaggggtggtaggagtaccagggagacaaggagagaaaggaggcatg
ggccaacagggacaaaaaggtgaaagaggagttatgggcccaccaggtaacatgcccatg
acagaaatgatacgtatgaaagccgttatgaagggtgcaaaaggtgaccatggacatcaa
ggacatccaggtttcactgggcctcgaggcaccaaaggtagggaagggtttccaggaaaa
gacgggtctcatggattacccgggctccccagcaatctaaaaggtctgaaaggacagcct
ggagctcagggacttcctggccagaaaggaatgccaggccctacaggattcccaggaatt
catggattttttggaccaagcggacctaggggggacaaaggttcaccaggtgcttatgga
gcaacaggaaatgttggaagcaaggggattaaaggtgaccagggtgacattatcgatctc
ccaggacctacaggatccagaggggaaactgggctacctggacctttaggtgacaatggt
tacccaggtgagcctggaattagaggaagttctggatttgatggtatcaaaggaagtaaa
ggggctcacggtgaacctggaagacaagggccatcaggtgctgatggcctaaagggcgtt
ccaggagaccagggctctaagggctggccaggagcgccaggacaggcaggggtgcccggt
agaccaggccatccaggacaaataggttttcctggccttgatggaatttcagggttgtat
ggcctgaaaggtcaaaaaggccctcaaggtgttgcaggtcttgacaattggggtatacca
ggcgaggatggacaaaaaggagaaacaggagatgcaggtattcccaacacagagactggg
gcccctggagctcatgggtttaaaggttcaacaggagatcgaggtgattatggtgaacca
ggccctccaggagatcaagggcctccaggagatcaaggaattcctggcagaaagggtcca
tcaggggacacagggcttcttggtcaaaaaggtcttccaggctttcctggagccactggt
cttccaggttttccatctccatttggagctaaaggagatcgcggcattcaagggaatatc
ggacactcaggaccaaaaggactacagggggacataggagacaaaggatttcctggacag
tttggtgtgcccggagaaaaaggtataaagggacccatgggaaccatgggcgttccagga
ccacgtggttcacaaggtgatagaggcctttctggacctaaaggagagcctggaccacca
ggcccgcctggcccccatggtgctaaaggactccctccaactcctgtaaaggtgccaggg
gagagaggaccccctggtgcacttggtatacaaggactacaaggagcgagaggggagatc
ggctctatgggaccccctggagatccagggtatgtgggaccacaggggcaaaaggggatg
ccaggggtccctggaataccaggaacaccaggtgaccgtggggatgttggtccaatggga
caccggggccttcagggcctagaaggagaccctggccgtactggtattcctggtcccact
ggtatgcctggacgcagtgtcagtgttgggtacctcctggtgaaacacagtcagtctgaa
cacacaccaatgtgccctgtgggaatgtccaagctgtgggatggctatagcttgctttac
tttgaaggtcaagagaaagcacataatcaagatcttggtctggcaggctcttgtctccgt
cgtttcaacaccataccattcctgtattgcaatcctggtgacatatgctactatgctagt
cgcaatgacaagtcctattggctctctacaactgccccaattcccatgatgcctgtagaa
gagtcagaaataaagccctatatcagccgctgttcagtgtgtgaagctccatctgtggct
atagctgtgcacagtcaggatacaactatcccacaatgccctgcaggctggagaagctta
tggattggctactctttcctcatgcatacagcagcgggagatgaaggaggtggtcagtct
ctggtgtctccaggctcgtgtcttgaggatttccgcaccactccctttattgagtgtaat
ggagctaagggtacctgtcactacttctctaacaagcacagtttctggctgacatccatt
gaccagcccttccacagtttccccgagtctgagactctcaaggcaggacagctgctctcg
cgcatcagtcgctgccaagtctgcatgaagaacctgtga

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