Neoarius graeffei (lesser salmon catfish): 132891767
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Entry
132891767 CDS
T10798
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04382
Cornified envelope formation
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
ngra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132891767 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132891767 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132891767 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132891767 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ngra04147
]
132891767 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132891767 (col4a1)
Exosome [BR:
ngra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132891767 (col4a1)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132891767 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132891767
NCBI-ProteinID:
XP_060785667
LinkDB
All DBs
Position
9:complement(48835510..48910837)
Genome browser
AA seq
1634 aa
AA seq
DB search
MRILRGALFLLAAVLLSADPSRAEGCSGSSCGKCDCSGVKGAKGERGLPGLQGNMGFPGV
QGHEGPQGPMGPKGDRGEPGAHGMKGIRGPPGVPGIPGIPGHPGIPGQDGPPGLPGIPGC
NGTKGDQGRDGTPGIPGLQGPPGFPGDPGMKGDPGGVIGGFIPQKGEKGFPGIPGLPGPP
GNPGLQGPAGPPGREGPRGYSGDPGPPGPPGDKLSFVGPKGDKGEKGLRGPPGAPVAVGG
PQTIYLPGLKGQKGDPGEKGDMCSPYQAKIKGEPGPVGQKGKPGKDGVSGTKGGKGEPGN
PGFSGDKGQKGERGPPGYGEGPPGDPGPPGLPGPKGEIGPPGVPGEPGFPGKNVVGPPGD
RGFPGEIGQKGDKGANGQSLKGSSGADGPPGPPGPPGPLNEDCDVTYGEPGPPGPPGLQG
EEGQKGDKGDTCTLCSATGPPGLPGAPGPKGNQGFPGQPGSKGEKGPSGLPGQPGLTGRD
GSPGLFGEPGAKGEPGDIYIAPELKGEKGLSGFPGSRGLPGIDGIPGKDGHPGLPGQKGE
AARVGIKGDRGQDGDPGIRGPTGERGPPGRPGVGQPGESGEKGSPGLPGVPGKPGEPGPK
GEPGKGVSSPGPPGPPGPRGQTGLSGLQGERGPPGDQGWPGLTGDKGDPGLPGIGFPGPP
GPKGYSGTPGVPGLPGDPGNPGQDGFPGRPGIPGQKGEPGIGLRGPKGSVGLPGVQGFPG
EKGNLGMPGVPGAEGTTGPPGPQGVKGDAGPPGFPGLSGPPGPPGPGEPGPPGPMGPPGQ
PGPLGRIGEKGEKGSQGFPGPAMPGPQGEKGTHGFPGSPGPKGLPGEPGSPGKDGFPGER
GPKGDIGIIGIPGSPGNPGQPGAPGSIGPRGDPGLSGSRGELGEPGPKGERGEPGIQGPA
GNMTDVDMVHMKGEKGDIGDKGYIGPAGEKGAEGVPGTPGMPGNPGMPGSPGKAGEKGDP
GFPGQPGPDGQPGVKGSMGEMGLPGALGPKGTKGVAGQPGHQGFKGDPGVKGEKGTEGLP
GIGIPGLPGEKGEMGPPGFPGESGNKGEKGSMGIPGIPGTPGAKGDIGVIGYPGSPGVPG
EKGVPGLPGLPGQSGFEGRPGEPGLQGPPGPTGKKGEPGKDGIPGGPGERGEAGLPGRGF
PGTPGQTGAKGEKGNPGPPGMAGSPGVPGTKGEKGLPGYQGHQGQPGERGLPGPSMEGPK
GEKGAHGLPGEPGQTGAPGPAGVPGSVGAKGERGEKGFPGIQGTQGLKGDKGFTGQPGEP
GAPGYKGVKGESGTPGLPGFKGLKGEHGLTGFKGEIGDRGFPGAKGNDGPPGPHGPSIFI
KGDLGLPGPQGPQGLPGLRGYPGPKGQQGLMGIQGIKGEDGAPGYNGIHGAKGQPGHTGP
SGPRGYPGPPGPDGIPGQVGPPGPASMDHGFLVTRHSQSIEVPLCPQGTTLIYDGYSLLY
VQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMSMAP
ITGESIKPFISRCAVCEAPAMVIAVHSQTVAIPPCPQGWLSLWIGYSFVMHTSAGAEGSG
QALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFSKPVPTTLKAGNL
RTHISRCQVCMKRT
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcttaagaggtgcgctctttcttctggcagccgttttgctcagcgcagatccg
agcagagctgagggatgttcaggctcatcatgtgggaagtgtgactgcagcggtgtaaaa
ggggcaaagggagaaagaggtttacctggcttacaaggcaatatgggatttcctggtgtg
caaggtcatgagggcccccaagggccaatgggaccaaagggagatcgaggtgagccaggg
gctcatggaatgaaaggaatacgtggccctcctggtgtacctggtattccgggaattcct
gggcacccgggtattccaggtcaagatggcccaccgggactaccgggtattccaggctgc
aatggaacaaagggggatcaaggtagagatggaaccccaggcataccaggattgcaagga
ccaccaggttttccaggcgatccaggaatgaagggtgacccaggtggtgttattggtgga
tttattcctcagaaaggagagaaaggctttccaggaataccaggattaccagggccacca
ggaaatcctggactacaaggaccagctggcccaccaggacgagaggggcctcgaggatat
tccggtgatcctggccctcctggccctcctggtgataagttgagttttgttggtccaaaa
ggtgacaagggtgaaaaaggcctcagaggtccacctggggctcctgtagcagttggagga
ccacagacgatttatctccctggactaaaaggtcaaaaaggggaccccggagaaaagggt
gatatgtgttcaccatatcaagcaaaaatcaaaggtgaaccaggacctgtaggccaaaaa
ggaaaaccaggaaaggatggagtcagtgggacaaaggggggaaaaggtgaacctggtaat
cctggcttttctggtgataagggccaaaagggagaaagaggacctccaggatatggcgag
ggtcctccaggcgatcctggtcctccaggcttacctggtccaaagggagagataggcccc
cctggggttcctggagagcctggtttcccaggtaagaatgtggtcggtcctcctggagac
agaggctttcctggagagattggacagaaaggagacaaaggtgctaatggacagtctctc
aaaggctccagtggagctgatggacctcctggtccacctggacccccagggcctttaaat
gaggactgtgacgttacttatggagaaccaggccctcctggacctccaggcttgcaagga
gaagagggacagaaaggtgacaaaggagacacttgcacactgtgctctgctactgggcct
ccaggtttgcctggtgcgccagggccaaaaggaaatcaaggtttccctggacagccagga
agtaaaggagaaaagggtccatctggcctacctggacagcctggattaacgggaagagat
ggctccccaggtttgtttggtgagcctggggcaaagggtgaaccaggtgacatctatata
gcgccagagctgaagggagagaagggtctctcagggtttcctggcagcaggggattacca
ggcatagatggaattcctgggaaagatggacatccaggtctgcctggacagaaaggagag
gcagctagagtgggtattaaaggtgaccgtggtcaggatggagatcccgggataagagga
cccacaggtgagagaggacccccaggtcgtcctggagttggccaacctggagagtctgga
gaaaagggcagtccaggacttcccggtgtcccaggaaagcctggagaaccaggacctaaa
ggtgaacctggtaaaggtgtaagttcaccaggacctccaggtccaccaggacctcgtggt
cagacaggactgagtggccttcaaggtgaaaggggtcctcctggagatcaaggatggcca
ggattaactggtgacaaaggtgaccctggtcttccaggaatcggatttccaggtccacca
ggtccaaaaggttattctggtacaccaggtgtgccaggattacctggagaccctggcaat
ccaggtcaggatggttttcctggacgcccaggaatacctggacaaaaaggtgaacctggc
attggcctccgaggacccaaagggtctgtaggactgccaggagtccaagggtttccgggt
gaaaagggtaatttaggaatgccaggagtccctggagccgaaggaacaactggaccacct
ggtcctcagggtgtaaaaggtgacgctggccctccaggattcccaggtttgtcaggacca
cctggacccccaggacctggtgagcctggaccacctggaccgatgggacctcctggacaa
cctggtcccttaggtcgtattggtgaaaaaggagagaaaggttcccaaggctttcctggt
cctgcaatgcctggtcctcaaggtgagaaaggcactcatggtttccctggatcaccaggg
cctaaggggttgccaggtgaaccaggaagtccaggtaaagacggattccctggggagaga
ggtcccaaaggagatattggaataataggaattccagggtcacctggaaacccgggtcaa
ccaggagcccctgggtccattggaccaagaggtgaccctggtctgagtgggtcgagggga
gagcttggtgaaccgggccctaaaggagagagaggagaacctggtattcaaggaccagct
ggtaatatgacagatgtggacatggtgcatatgaaaggagagaagggagacatcggcgac
aaagggtatatcggccctgcaggagagaagggggccgagggagtacctggaactcctgga
atgcctggaaatcctggaatgcctggttcaccaggaaaggcaggtgagaaaggtgatcca
ggatttcctggacaaccaggaccagatggacagcctggagtaaaaggcagcatgggagaa
atgggattgccaggagcacttgggccaaaaggcacaaaaggtgttgctggacagcctggc
catcaggggtttaagggtgatccaggtgtaaaaggtgaaaagggaacagaaggtctgcca
ggaataggaattcctggcctccccggtgagaagggtgagatgggcccacccggtttccct
ggagagtctggaaataaaggagagaaaggttccatgggaatcccaggtatacctggaaca
ccaggggcaaaaggagacataggcgtaattggttacccaggtagtcctggggtaccaggt
gaaaaaggagtccctgggttacctggattacctgggcagtctggttttgaaggacggcca
ggtgaacctggtctacaaggccccccagggccaacagggaagaaaggagaaccgggaaaa
gatggtatccctggaggtcctggagaaaggggtgaagcaggtttacctggtagaggcttt
cctggaacccctggtcaaacaggcgcaaaaggtgaaaaaggtaacccaggtccccctggc
atggctggaagtcccggtgttcctggaaccaaaggagagaaaggcctgccaggataccaa
ggtcatcagggtcaacctggtgaaagaggattaccagggccatcaatggagggacctaaa
ggggagaaaggagctcacggattgcctggagagccagggcagactggtgctccaggtcca
gcaggtgttccagggagtgttggagcaaaaggagagagaggagaaaaaggtttcccaggc
atacagggtactcagggtttgaaaggcgataaaggctttactggccaacctggtgaacct
ggtgcaccaggctataaaggagtaaagggtgaaagtggaactccaggccttcctggcttc
aaaggattaaagggtgagcatgggttgactggtttcaaaggagagattggtgaccgtgga
tttcctggagctaaaggtaatgatggccctcctggacctcatggaccaagtatctttata
aaaggagaccttggtttaccaggaccacagggtccccaaggtttaccagggttgagaggg
tatcctggaccaaaaggacagcaaggattgatgggaatacagggtattaaaggagaggat
ggggcaccaggatacaatgggattcatggagctaaaggacaacctgggcatactggacct
tctggacccagaggatatccaggtcctccaggtcctgatggaatcccaggtcaggttggc
cctcctggacccgcctccatggaccatggcttcctagtgactcgacacagtcagtccatc
gaagtgcccctgtgtccacaaggcaccactctgatttatgatgggtactccctcctgtat
gtgcagggaaatgagcgatcccatggccaagacctgggtacggccggtagctgtttgagg
aagttcagccccatgccattcctcttctgcaacatcaacaatgtgtgtaactttgcctct
cgtaatgactattcctactggctcacatctcctgagcccatgcctatgagcatggctcct
ataactggcgagagcattaaacctttcatcagcagatgtgcagtgtgtgaggcgcctgcc
atggtgattgctgtgcacagtcagactgtagccatcccaccctgccctcaaggctggcta
tctctgtggattggttattccttcgtcatgcacaccagtgcaggtgctgagggctctggt
caggctctggcctctcctggctcctgtctggaggagttccgctctgctcccttcatcgag
tgtcatggccgtggcacctgcaactactatgctaactcctacagtttctggttggccacc
atcgaggacaatgagatgtttagcaaacctgtccccactacactaaaggctgggaatctg
cgaactcacatcagtaggtgccaagtgtgcatgaagaggacttag
DBGET
integrated database retrieval system
