Neoarius graeffei (lesser salmon catfish): 132892035
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Entry
132892035 CDS
T10798
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ngra04147
]
132892035 (col18a1a)
00535 Proteoglycans [BR:
ngra00535
]
132892035 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132892035 (col18a1a)
Exosome [BR:
ngra04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
132892035 (col18a1a)
Proteoglycans [BR:
ngra00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
132892035 (col18a1a)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132892035 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
132892035
NCBI-ProteinID:
XP_060786330
LinkDB
All DBs
Position
9:complement(79889662..80217385)
Genome browser
AA seq
1583 aa
AA seq
DB search
MTQYSHEYSVSNDLLTVESDRSFFARETHATESPRCVLVESDFPFCYGLNTGSFTVPNFL
NQSSVEDVQALLGEWAFLIQSGCHHAVEWFFCLLAMPRCGVPGLPPQMPCRSFCELLIDS
CWTLLQDRRLPVECSSLPEESDDGSQCLSVCTQKGRVVSLLQLISSPLPEGVTSSYEADP
GFVLDQNSKISMPARVHLPPSFYRDFSLLFNLKPTSTKAGVIFSITDTNQQIMYVGVKLT
AVKNRKQDIVLFYTEPDSQASYEAARFTVPSLVNNWTRFSISILDDQVTLYPSCDSEPQM
LHFERSPDEMELETGAGIFVGQAGKADHDKFVGIIGDLKVVGDPHAAEQYCEEEEDDSDG
ASGDYGSGDYETKHTVTTTSQPSNPLQQPPLNPTVVTVSKDLSEGSVDGYGWISGSYADS
HRTSSSQGNSGRLSGSYYDSSGTYDNSHGIFGSYEPASETHGDSQRTSVSGDGTRTSVLS
QDNRRSFERTADSGRTSNSRRVTSLSDISYAASTGGQGLTGAERSNAVELRPGISRSQVF
TETGGARREKGEKGDRGPKGDRGPEGPKGDAGYRTGSGGSTKGEKGSPGEKGMKGAAGFG
YPGPKGDQGPPGPQGRPGPPGPSVDIVERGDAVVQRITGPRGPPGPPGPPGPEGEHGDPG
EDGIAGPRGPPGFPGTPGDPGAKGEKGDKGEGYPGPRGPPGPPGPPGPPSRSDRPTFVDM
EGSGFGDLEDVRGLPGPPGPPGPPGPPGPAGPTSASHVAVSGVSGPSGPPGKDGIPGQPG
LPGLPGPTGKPGLPGPKGEKGDTGELGLPGAVGEKGAQGPPGPPGLPGQSGLAGLPGPMG
PVGPPGPPGPRYPAGFDDMEVSGSFSGVPGVRGPEGVRGPPGLPGQPGIPGEKGEKGNQG
LPGPVGRSGLDGFPGPPGPQGEVGLKGARGDPGRDGVGLPGPPGPPGQIIYRSTDGLSAD
TVFERQLGPMGPKGERGDPGTPGHGIKGEKGEPGVVIGPDGSPLFLSSTVGQKGDRGLPG
PVGPTGAYGPPGMKGEIGMPGRPGRSGIVGSKGEKGEPGSGSGYSYPGPPGPPGPPGPPG
TPAYPLAVDRFGRYDDSARVYPGMKGEKGDRGAPGTPGVSGSFDIYTLKTELKGERGDPG
LKGEKGEPGGHYGSHYGGVQGPPGLPGPKGDSIPGPPGPQGPPGPPGVGYEGRPGNPGPP
GPPGPPGSPSLPGAHRPISIPGPPGPPGQPGLPGQNAGVTVLRTFDLMLAAAQRQPEGAL
IYVTDKSDLYVRVRDGVRQVMLGNYNPFYRDSNNEVAAVQPPPVVHYSQSHSANNGAGHY
AHAVDTPVQQPESHVSEHSQSGTDRRYSTHYSPHPDTRYPPQPDHKYTSHTDQHYVPVQP
ERHHSTPILRPSTPIHQPESHVHTSGPGLHLIALNSPQVGNMRGIRGADFLCFQQARAAG
LKGTFRAFLSSKLQDLYSIVRKSDRNTLAIVNLKDQVLFRSWESVFGDSEGRLKTNVPLY
SFDGRDILRDSAWPEKMIWHGSSAEGHRQLDNYCETWRTSDHAVMGLASSLQAGQLLQQK
PSSCSNNFIVLCIENSYITQSKK
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgacacagtattctcatgaatactctgtctcaaacgatttactaaccgtagaaagcgat
cgctctttctttgctagggagacacatgccactgaatccccacgctgtgtgttggttgag
tctgattttccattttgctatggtctgaataccggtagtttcacagtacccaactttctt
aaccagagcagtgtggaggatgtgcaggcacttctgggtgagtgggcttttctcattcag
tcaggctgccaccatgcagtggagtggtttttctgtttgctagcaatgccacgctgtggg
gtgccaggcctacccccacagatgccatgccgcagcttctgcgagctcctgatcgacagc
tgctggacactcctgcaggacagacgcctcccagtggaatgcagctcactccctgaggag
agtgatgatggcagtcagtgcttgtccgtttgtacccagaaagggagagttgtttcgctt
ttacagctgattagttcccctcttcctgaaggtgtcaccagtagttatgaagcagaccct
ggctttgtgctcgatcagaactccaagattagtatgccggcccgcgtgcacctgccccca
tctttttaccgtgacttttcactcctgttcaacctgaagcccacttccaccaaagctgga
gtcatcttctcaatcactgacaccaaccagcaaatcatgtatgtgggggtgaagcttaca
gccgtgaagaacagaaagcaagacattgtcctgttctacactgagccagactcccaggca
tcctatgaggctgcaagattcactgttccctcccttgtcaacaactggactcgtttctct
atcagcatattggatgatcaagtcacgctgtaccccagttgtgactcagagccccagatg
cttcactttgagcgttctccagatgaaatggagctggaaacaggagccggaatctttgtg
ggtcaagctggaaaagctgatcatgataagtttgtgggtattattggagacctaaaggtg
gttggagaccctcatgcagctgaacagtattgcgaggaagaagaggacgattccgatggg
gcctcgggtgattatggaagtggtgattatgaaaccaagcacacagtcacgaccacaagc
caaccttccaatcccctacagcagccgccactgaacccgactgtggtaacagtgagcaag
gatttgtctgaaggctcagttgatggctatggatggatttctggctcatatgctgattct
catcgaacgtcttcctcgcaaggtaattctggacgattgtctggatcatattacgattct
tctggcacgtatgacaattcacacggaatatttggctcatatgaaccagcatctgagaca
catggcgattcccagagaacatctgtctcaggcgatggcacacgaacttcagttttgagc
caagataacaggcgaagctttgaacgaactgccgattcagggagaacttcaaactctcgg
agagtaacaagtttgtctgatatctcgtatgctgcgagtactggtggccaaggacttact
ggtgctgagagaagcaacgctgtggagctcaggcctgggatttccagatcccaagtgttc
acagaaacaggtggagctcggagagaaaaaggtgagaaaggcgacagaggacccaaagga
gaccgtggacctgaggggcccaagggagatgcagggtacaggaccggatctggaggcagc
accaagggagagaaaggcagcccaggagagaaaggaatgaagggtgctgcaggatttggc
tatcctggaccaaagggtgaccaaggacctcctggtcctcaaggtcgtcctggtcctccc
ggtcccagtgttgatatagtggagagaggggatgcagtagtgcaacgtataacaggacca
aggggacctccaggacctccagggcctcctgggcctgaaggagaacatggtgaccctggt
gaagatggaattgctggaccacgtggaccacctggtttcccaggaacccctggagatcct
ggagctaaaggagaaaaaggtgacaagggtgaaggttatcccggaccgagaggaccccca
ggacctccgggacctccaggacccccctctcgctcagacaggcctacatttgtggacatg
gagggttctggctttggtgatctagaggatgtgcggggcttgcctggtcctcctggccca
cccggcccacccggccccccaggacctgcaggccctactagtgcctcacacgttgctgtt
tctggtgtatctggaccttcaggtccacctggaaaggacggcattccaggacaaccggga
cttccaggtctcccgggtcctaccggaaagcccggcctgcctggccctaaaggagagaag
ggtgataccggcgagctcggcttacctggagctgtgggagaaaagggtgcacaggggcct
cccggtccaccaggactacccggacagtctggtctcgctggccttccaggaccaatggga
cccgtgggaccacctggacctccagggccaagataccctgctggatttgacgacatggag
gtttcaggttctttcagtggcgtgcctggagtcagaggaccagaaggcgtacggggtcca
cctggtctgccgggtcagcctggtatacctggggagaaaggagagaaaggcaaccaggga
cttccagggccagttggtcgttctggacttgatggctttcctggaccaccgggaccacag
ggagaggttggattgaaaggagcgagaggtgatccaggtcgtgatggtgttggccttcca
ggaccccctggacctccaggacaaattatctatcggtctacagatggtctatcagctgat
actgtatttgaaagacaactgggccccatgggaccgaagggcgagagaggagacccaggt
actccaggacatggcattaagggtgagaaaggagaacctggtgtggttattggacctgat
ggaagccctctatttcttagttcaacagttggtcaaaagggggatcgtggacttcctgga
cctgttggaccgactggagcatatggtcctcctggcatgaagggtgagatcgggatgcca
ggcaggcctggtcggtcaggtatagtcggaagtaaaggagaaaaaggagagccaggctct
ggttcaggatacagttatcctggcccacctgggcctccaggtcctccaggtccccctgga
accccagcatatcctctagctgtggacagatttggtagatatgacgattctgcaagagtg
tatccaggtatgaaaggagagaagggagaccgtggggcccctggtactcctggtgtgtca
ggcagctttgatatttacactctgaagacagagctgaagggagagcgtggagaccccgga
ctgaaaggagagaagggcgagccgggcggacactacggttctcactacggaggtgtgcag
ggaccaccaggacttcctggtcctaaaggagattctatccctggtcctcctggtccacag
ggtccaccaggacctcctggtgttggttatgaaggccgtccaggaaatccaggaccacca
ggacctcccgggccacctggttcaccctcgttacctggcgctcacaggccgatcagcatc
cctggccctccaggtcctcctggccaacctgggttgcctggccagaatgctggagtgaca
gtactgagaacatttgacttaatgctcgcagcggcacagagacaaccagagggtgctctc
atctacgtaacagacaaaagcgatctctatgtcagagtgcgtgatggtgtcagacaagtc
atgcttgggaattataaccccttttacagagattcaaacaacgaggtggcagcagtacag
cctcccccagtagtgcactactctcaaagccattcagcaaataatggagcagggcactac
gcccatgctgttgacactccagtccagcaaccagaaagccacgtgagcgagcattctcag
tcaggcactgatcgacgttacagcacacactactcccctcacccggacaccaggtaccca
cctcaaccagaccacaaatatacgtcccacactgatcagcactacgtccctgtacagcca
gagaggcaccacagcaccccgatcctcagacccagcacacccatccatcaacctgagagt
catgtacacacatcaggaccagggctgcatctgatcgccctgaacagccctcaggtgggg
aacatgagaggcatccgtggcgcagacttcctgtgcttccagcaggcccgtgctgcaggc
ctgaagggaacattcagggctttcctgtcctccaaactgcaggatctctacagcatcgtt
cgcaaatctgacagaaacacactggctattgtcaaccttaaggaccaagtgctgttcagg
agctgggaatcggtgttcggtgattcagagggcaggctgaagaccaacgtgcccttatat
tcatttgatggcagagatatcctcagggacagtgcttggccagagaagatgatctggcat
ggctccagtgccgagggtcaccgtcaattggataactactgtgagacgtggaggacgtcg
gatcacgccgtgatgggtctggcctcatctctgcaggctggccagctcctacagcagaaa
cccagcagctgctccaacaacttcatagtgctgtgtatcgagaacagctacatcacacag
tctaagaaataa
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integrated database retrieval system
