Neoarius graeffei (lesser salmon catfish): 132892454
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Entry
132892454 CDS
T10798
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03015
mRNA surveillance pathway
ngra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132892454 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
132892454 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132892454 (pabpc1l)
03041 Spliceosome [BR:
ngra03041
]
132892454 (pabpc1l)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132892454 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
132892454 (pabpc1l)
Spliceosome [BR:
ngra03041
]
Complex C
Other components
Complex C specific factors
132892454 (pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RBD_RDR6
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
132892454
NCBI-ProteinID:
XP_060786722
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All DBs
Position
10:complement(19495284..19523664)
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AA seq
623 aa
AA seq
DB search
MNSSGPVYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPCLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAKRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGAKAMEFTNVYIKNFGDDFDSEKLRRIFSEFGKTLSVRVMTDDKGRSRGFGFVNYAN
HEDAQKAVAGMNGKELNGRVLYVGRAQKRLERQSELKRKFELIKQERLNRYQGVNLYVKN
LDDGIDDDKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLASVRAIPGPAIPAYQQSSGYYMPSIPQPQGRAFY
NAVPNLRPAPRFATQAPRPQAPYSAQTLRPVMARRTSTPISTVRQASTQAPGVNTQRMAH
IGTQTAGGRTVGGSMMRGVGQYKYSSGVRNVQQVITVPAPVQQMLSSPVMEPAVHVKGQE
PLTPSMLAAAPLLEQKQLLGERLYPLIQALHPKLAGKITGMLLEIDNSELLHMLESPESL
HAKVEEAVAVLQAHQAKEVSPNK
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtgggccggtgtaccctttggcctcgctctatgtgggtgacctgcatcct
gatgtcacggaggccatgctatatcaaaagttctcccctgcaggacccatcatgtccatc
cgtgtgtgcagggacatcatcacccgcaggtcactcggttacgcttacatcaatttccag
cagcctgctgatgcggaatgtgcactggacacaatgaactacgaagtgataaagggtcgt
ccaatcaggatcatgtggtcgcagcgagacccttgtctgaggaagtctggagtggggaac
atcttcattaagaacatggacgagtcaattgacaacaaggcgctttacgacaccttctct
gcctttggcaacatcttgtcatgtaaggtggtatgtgacgaaaatggctcaaaaggttat
ggatttgtgcacttcgagacccaggaggcagcgaagcgagccattgaaaccatgaacggc
atgctcttgaatgatcgcaaagtttttgttggacattttaaatcccgtaaggagcgggag
gcagagtttggcgcgaaggccatggagtttaccaatgtttacatcaagaactttggagat
gattttgacagtgagaaactgcgccgtatcttctctgaatttggtaagaccctgagtgtc
cgtgtgatgactgacgataaagggcgttctcgtggcttcggcttcgtgaactacgcaaac
catgaggatgcacagaaggctgtagctgggatgaatggaaaggagctgaatggacgagtg
ctgtatgtgggccgggctcagaagagactggagagacagtctgaactgaaacgcaagttt
gagctaatcaagcaagaacgcttaaaccgataccagggggtgaatctgtatgtaaagaat
ctggatgatggtattgatgatgacaaactgagaaaagagtttgccccttatggcatgatc
accagcgctaaggtaatgacggaaggtggtcacagtaagggctttggcttcgtttgcttc
tcttctcctgaggaagctacgaaagctgtgactgagatgaacggccggatcgtcagcact
aagcctctatatgtggccctggcccaaaggaaagaggagcgcaaggccatactcaccaac
cagtacatgcagagattggccagtgtgagagccattcctggccctgccattcctgcctac
cagcagagttctggctactacatgccttccataccgcagcctcagggacgtgccttctac
aacgctgttccaaatctacgaccagcaccacgctttgctacccaagccccaagaccacag
gctccttactcagctcagacgctgaggccagtgatggcacgcagaacctccacccccatc
agcactgtgcgccaggcctccacccaggctccaggtgtgaacactcagagaatggctcac
atcgggactcagacagcaggtgggcggactgtgggagggtctatgatgagaggtgtcggt
caatacaaatactcaagcggtgttcgaaacgttcaacaggtcatcactgtaccagctcct
gttcaacaaatgctgtcttctccggttatggagcctgcagttcatgtaaaaggtcaagag
ccccttactccatcaatgctggcagctgcaccccttttggaacagaaacaactactgggt
gaacgtttgtatccactgatccaggcccttcatcctaaacttgctggtaagatcactggc
atgctgctcgaaatcgacaactctgaacttctgcacatgcttgagtctccagagtctcta
catgccaaggttgaggaggcggtggctgttcttcaagctcatcaagcaaaggaagtctca
cctaataaatag
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