KEGG   Neoarius graeffei (lesser salmon catfish): 132892762
Entry
132892762         CDS       T10798                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
ngra  Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04115  p53 signaling pathway
ngra04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ngra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    132892762 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    132892762 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ngra04121]
    132892762 (cop1)
Enzymes [BR:ngra01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     132892762 (cop1)
Ubiquitin system [BR:ngra04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    132892762 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     132892762 (cop1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 zf-C3HC4_2 Beta-prop_RIG_2nd EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 Beta-prop_WDR90_POC16_2nd zf-RING_5 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 zf-RING_10 CREPT WDR90_beta-prop_4th zf-rbx1 UvrD-helicase Sina_RING zf_C2H2_10 Tma16
Other DBs
NCBI-GeneID: 132892762
NCBI-ProteinID: XP_060787115
LinkDB
Position
1:complement(34184370..34244206)
AA seq 693 aa
MSGCRQQQQHPGGASGSVPGTSSGSTASANVANSGGSSANANGNGISSRSLGSGNEVQLL
GAQRPSLSGSNYSKKRPLCNGLINPYEDKSNDFVCPICFDMIEEAHMTKCGHSFCYKCIR
RSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSEDKRLKRDHPNGTKWQFFQDV
LGTDQEHLDLANVNYMLELLVQKKKQLEAESQAAQRQILMEFLKEARRNKREQLEQLQKE
LNFLEEDIKSVQDMNGLYSPGTDMDPNLDSTVPQCDDAHSPAPSSSIIEPTEYIQAPQFG
GSTQGIRQTSYNSTLASRRKRLTAHFEDLEQCYFSNRMSRITDDSRTVNQLDDFMECLSK
FTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGTVIQDAV
DIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWS
VDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPTSRYHLAFGCADH
CVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHCLRSFKG
HINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDKKEDDTNE
FVSAVCWRALPDGESNVLIAANSQGTIKVLELI
NT seq 2082 nt   +upstreamnt  +downstreamnt
atgtcaggctgtcggcaacagcaacaacatcctggtggtgcttcgggatcagtaccgggg
acgagctctggaagcacggcgtctgctaatgttgctaatagtggtgggagcagcgctaat
gctaatggcaatggcatttcttcacgaagtctcggatccgggaacgaggtgcagctactg
ggcgcacagagacccagtttatccggctccaactatagcaagaaaagacctctctgtaac
ggtcttattaatccatatgaagacaagagtaatgattttgtgtgtcccatatgttttgac
atgatagaggaagctcatatgactaaatgtggtcacagtttctgttacaaatgtatacga
cggagtttagaggacagcaacaggtgcccgaaatgcaattacattattgacaacgtggat
cagctgtaccccaacttcttagttaatgagctgatccttaagcagaaacagagatctgaa
gataagcgactgaaacgggaccaccccaatggaaccaagtggcagtttttccaagatgtt
cttggcacagaccaggagcatctggatttagcaaatgtcaactatatgttagaactgctg
gtgcagaaaaagaagcagcttgaagcggaatcgcaagcagctcagcgtcaaatcctaatg
gaattcttgaaagaagccaggaggaataagagagagcaactggagcaattacagaaagaa
ctgaactttttggaagaggacataaagagtgttcaggatatgaatgggctgtactcacca
gggactgatatggaccccaatttggacagcactgttccccagtgtgatgacgcacactct
cctgcacccagcagtagcatcattgaacccacagagtatatccaggctccccagtttgga
ggaagcacacagggtataagacagacatcatacaatagcactctggcctctcggagaaag
aggctaacggcacacttcgaagacctggagcagtgctacttttccaacaggatgtctaga
atcacagatgacagcagaactgttaaccaactggacgacttcatggagtgtctctccaaa
ttcacacgttacaattctgtacgccctttggccactctgtcttatgcaagtgacctctac
aatggttctagtattgtttctagcattgagtttgaccgtgactgtgattatttcgccatt
gctggtgtcaccaagaaaattaaagtttttgagtatggaacggtgatccaggatgctgtg
gacattcattatcctgtcaacgaaatgacatgcaactccaaaataagctgtatcagctgg
agtagctaccacaagaacctgttggcaagcagtgactatgagggaacagtgatcctttgg
gacgggtttacaggccagaggtcaaaagtttatcaggagcacgagaagagatgttggagt
gttgatttcaaccttatggatcccaaacttttggcttcaggctcagatgatgcaaaagtc
aagttgtggtccacgaacttggataactccgttgccagcattgaagccaaagccaatgtg
tgctgtgtcaaattcagcccaacatctaggtatcaccttgcatttggctgtgcagaccac
tgtgtccactactatgatttgcggaacactaagcaacccatcatggtattcaaaggtcac
cggaaggctgtgtcctatgccaagtttgtcaatggagaagagattgtctctgcctccaca
gacagccagctaaagctgtggaatgtgaacaagccccactgcctgcgctctttcaaaggc
catattaatgagaagaactttgtaggtttggcctccaatggagactatgtagcatgtgga
agtgagaacaactccctatatctctactacaaagggctctccaaaacattgctgaccttc
aagtttgacactgtgaagagcgttctggacaaggacaagaaggaggacgacactaacgag
tttgtcagtgccgtatgctggcgggctttaccagatggggagtccaatgtgctgattgca
gccaacagtcaaggaacaatcaaggtactcgagctaatttga

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