Neoarius graeffei (lesser salmon catfish): 132893041
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Entry
132893041 CDS
T10798
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132893041 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngra03041
]
132893041 (snrnp200)
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132893041 (snrnp200)
Spliceosome [BR:
ngra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132893041 (snrnp200)
Complex C
U5 SnRNP specific factors
132893041 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
T2SSE
PhoH
SWI2_SNF2
DUF603
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
132893041
NCBI-ProteinID:
XP_060787736
LinkDB
All DBs
Position
10:37026334..37179581
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDDMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIT
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEGSDDSEGEEADVGCTLS
ANLGSAGDVMTNKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDRE
CENQLVLLLGFNTFDFIKVLRQHRRMILFCTMLASAQSDLEKERIMSKMEADQDLSKVLY
QLQETEKEDIIREERSRRERVRKSRVDSNLDSMDIDHGQTMSARHLLDLEDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFSEDETLIAIEKMPKYSQAAFEGLKTLN
RIQSKLFKTTMETDGNLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIA
PMRSLVQEMVGSFGKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMLGKLPDMLN
AEIVLGNIQNAKDAVNWMGYTYLYVRMLRNPTLYGISHDQRNTDPLLEMRRMDLVHTAAT
VLEKSNLIKYDKRTGSFQVTDLGRIASHFYITHDSIMTYNQLLKPTLSEIELFRVFSLSS
EFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIKK
IEKKSFPFERLYDLNHNEVGELIRMPKIGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDEKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVTSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNAAFECLYQ
NMFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNSEGRCVYITPM
ESLAEQVFVDWHQKFQGLLNKKVVILTGETSTDLKLLGKGDIIISTPDKWDILSRRWKQR
KNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHTIMKHSPSKPSLVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCSAKDLAPFLEKLSDGALKETLSNGVGYLHE
GLSMTERRTVEQLFNSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPLQDDEGCCVIMCQGSKKDFFKKFLYEPLPVESHLDHRLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDTLLRQLSQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTTEHIKRSTDKGVESI
FDIMEMEDEDRINLLQLSDIQMADVARFCNRYPNIELSYEVADRDDIKSGSPVVVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVVGVH
NYTLYFMSDAYMGCDQEYKFSVDVKEADSDKDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttacagcgcgtagcttgcagtacgaatataaagcgaactcaaacttggtg
ttgcaagcggatcgctccctgatcgaccgcacacggagagatgaacccactggcgaggtc
ttgtcactggttgggaagttggagggaacaaaaatgggtgataagagtcagagaacaaaa
ccacaaatgttggaagaaaggagggcaaagagaagaaagcgagatgaggacagacatgat
attaataaaatgaaagggttcactctcctgtctgagggcattgatgacatggtgggtatt
gtttacaagcccaagaccaaagagaccagagaaacatatgaaatcctcctgagcttcatc
caggctgcacttggagatcagccaagagacatcctgtgtggggctgctgatgaagtcttg
gctgtattaaaaaatgacaagatgagagataaggaaagacggcgagaggttgagcagctg
cttggccctgcagatgacactcgttaccatgtcctcgtcaacctgggcaagaagatcaca
gactatggaggagacaaggagctccaaaatatggatgacaacatcgatgaaacgtatggc
gtaaatgtgcagtttgaatctgatgaagaggaaggtgacgaggaccagtttggagaagta
cgcgatgaaggctctgatgacagtgagggcgaggaagcagatgtgggatgtacattgtct
gctaatcttggaagtgcaggagatgtgatgacaaataaaaagaaagaccttcatccaaga
gatatcgatgcgttttggcttcagcgacagctcagtcgtttctacgatgatgctattgtg
tctcagaagaaagctgatgaagttctggaaattctcaagactgccagtgatgatagggaa
tgtgaaaatcagttggtacttttgctgggctttaacacctttgacttcatcaaggtccta
cgccagcacagacgcatgatcctgttctgcaccatgttggcaagtgctcagagtgacttg
gagaaggagaggattatgagcaaaatggaagcggatcaggatttgtccaaagttctttat
cagttgcaggagactgaaaaagaagacatcattcgagaagagagatcacgaagagaaaga
gttagaaagtctcgagtagacagtaatctggattcaatggacatcgatcatggacagaca
atgtcagcccggcatctgctagatctagaggaccttgccttcacccagggcagtcatttt
atggccaacaagcgctgccaactgcccgatggttccttccgcaagcaaaggaaaggttat
gaagaggttcatgtacctgcacttaaacctaagcccttctctgaagacgagactctaatt
gctattgagaagatgccaaagtactcccaagcagcgtttgagggactcaagaccttgaac
cgcatccaaagcaagctgttcaagaccactatggagactgacggaaacctgttggtgtgc
gctcccactggagctggcaaaactaatgttgcattgatggctatgctcagagaaattggc
aagcacatcaacatggatggcaccatcaacgtggatgacttcaaaattatctatattgct
cctatgcgatcattggtacaggaaatggttggcagctttgggaagcgtttggctagttat
ggcatcacagtgtctgagttaactggagatcaccagctctgtaaggaggagatcaatgct
actcagatcattgtgtgcacacctgaaaagtgggatattattacccgtaagggaggagaa
cgtacatacactcagctagtacgcctcatcataattgatgagatccatttgcttcatgat
gatcgtgggccagtgctggagtctctgattgctcggactatccgaaatgtggagctgact
caagaggatgtccgcctcattggactcagtgccacgctgccaaattatgaggatgtggcc
acatgccttcgtgtagaccctgctaaaggtcttttctactttgacaacagtttccgtcct
gtgccactagaacagacatacgtcggaatcacagagaagaaggcgatcaagcggtttcag
atcatgaatgagattgtctatgagaagataatggaacatgcgggaaagaatcaggtcttg
gtgtttgtccattcacgaaaggagacagggaagactgcacgagcaatccgggacatgtgt
ctggagaaagacacgttgggacttttcctccgagaaggttctgcctccactgaggtccta
agaactgaggcagagcaatgcaagaatctggagctaaaggacctattgccatatggcttt
gccatccatcatgctggcatgactagagtggacagaacattggttgaggatctttttgct
gataaacatatacaggtactggtgtctacagctacattagcctggggagttaatttgcca
gcacacacggtcatcattaaaggtacacaggtgtacagcccagagaaaggcaggtggacg
gagctaggagctctggacatcttgcagatgctgggacgtgcaggtcgcccacagtacgac
tctaaaggagagggcattttgatcacatctcatggagagctgcagtattacctgtctctg
ctcaaccagcagttgcctatagagagtcaaatgttaggcaaactcccagacatgctgaat
gctgagattgtcctgggcaatatccagaatgctaaggatgctgtgaactggatgggttac
acttatctgtatgtgaggatgctgcgtaacccaacactctatggcatttcccatgatcag
cgcaacaccgatcccctgctagagatgcgtaggatggacctggtgcacactgctgccact
gtactcgagaagagcaatctgatcaaatatgataagaggactgggagctttcaggtgaca
gatctgggccgcattgccagtcacttctacatcacgcatgattccataatgacttataat
cagctgctaaagcctacactcagtgaaatcgagctcttcagggtgttctccctctcctct
gaattcaagaacatcactgtgagagaggaggaaaaacttgagcttcagaagcttctcgaa
agggtgccaattccagtgaaagagagtattgaggagcccagtgctaagataaatgtgctg
cttcaggcctatatctcccaactcaaactggagggctttgctctaatggcagacatggtt
tatgtcacccagagtgcaggtcggctgatgagggctatctttgagattgttctgagccga
ggttgggcccaactcactgacaagaccatgaacctttgtaaaatgatcgacaaaaggatg
tggcagtctatgtctcctctgcgacagttccgcaagcttcctgaagaagttatcaagaaa
attgagaaaaaaagctttccatttgaacgactatatgacctcaaccacaatgaagttggt
gaattgattcgtatgcccaagatagggaaaaccatacacaaatatgtgcatcagttcccc
aaactggatctggcagtgcatctgcaacccatcacccgctccacgcttaaagtggagctc
acgatcacaccagacttccaatgggatgaaaagatacatgggtcatcggaggcattttgg
atcttggtggaagacgtcgacagtgaagtgatcctacaccatgaatatttcctgctcaag
gcaaagtatgctcaggatgagcacctggtcaccttttttgtgcctgtatttgagccactg
cctccacagtatttcattcgagtcacctcagaccgttggctatcatgtgagacccagctg
cccgtgtcattccgccatctgatcttgccagagaagtatccacctccaacagagctgctg
gacctacagcctcttcctgtatctgccctcagaaatgctgcctttgagtgtctctaccaa
aacatgtttcctttcttcaaccctattcaaacccaagtgtttaatgctgtatacaacagt
gatgataacgtgtttgttggagcccccactggaagtgggaagacaatctgtgcagagttc
gccattctcaggatgctgttgcacaactcagaaggccgttgtgtctacatcacacccatg
gagtctctggctgaacaggtatttgtggattggcaccagaagtttcaaggtcttctgaat
aagaaggtagtcattctcactggagagaccagcactgaccttaagctactgggaaaaggt
gatatcatcatcagcaccccagataagtgggatattttgtcccgccgatggaagcagagg
aagaatgtccagaatgtcagcctcttcattgtggacgagactcatctcattggtggagag
aatgggcctgtcctagaagtaatctgctcaagaatgaggtacatctcctctcagatcgag
cgtcccatccgcattgtggcactaagctcatctctgtccaacgcgaaagatgtggcccac
tggttgggttgtagcaccacagcaacgttcaacttccacccaaatgttaggcctgtgcca
ctggagcttcacattcagggtttcaatgtgagtcacacacaaacccggctactgtctatg
gctaaaccggtctaccacaccatcatgaagcattctccatccaaaccatctttggtgttt
gtgccttctcggagacagactcgcctcactgccattgacatactaactttctgtgctgcg
gatgtggttccacaaaggttcctacactgctctgcgaaagacttggctccattcttggag
aagctgtctgatggcgcactgaaagagacgctttctaatggtgtgggttatctgcacgaa
gggctgtcaatgaccgaacgtaggacagttgaacagctttttaactctggtgccattcaa
gttgtggtggcctcccgttctctttgctggggaactaacatctctgcccacttggtcatt
gtcatggacacgcagtattacaacgggaaaattcacgcttatgtggattacccaatctat
gacgtgctgcaaatggtgggaaaggccaatcgtcccctacaggatgatgagggctgctgt
gttattatgtgccagggctctaagaaggacttctttaagaagttcctttatgagcctttg
ccagttgaatctcatttggaccaccgtcttcatgaccacttcaatgctgagatagtcacc
aagacagtggagaataagcaggatgccgtagactatcttacctggaccttcctgtaccgc
agaatgacccagaaccccaactactataatcttcaaggtatgtctcatcggcatctgtca
gaccacctgtcggaactggttgagaacacactgcaggatctggagcagtccaagtgcatc
agcattgaggatgagatggatgttgcccctctcaatctgggcatgattgcagcatactac
tacattaactataccaccattgaattattcagcatgtctctgaatgccaagaccaaaatc
cgtggtctgattgagatcatctccaatgctgccgagtacaagaacataccaatcagacac
catgaagacaccctgctccgtcagctatcccagaaggtgcctcacaaactgaataacccc
aagtttaatgaccctcacgtaaagaccaacctgctgttacaagcccatttgtcacgtatg
cagctgagtgctgagcttcagtccgacactgaagaaatccttagcaaggcagtgcgtctc
atccaggcatgtgtagatgtgctctccagcaatggttggctgagtccggcattggctgct
atggaactagctcaaatggtgacacaagccatgtggtctaaggattcttatctaaaacaa
ctgccacacttcacaacagagcatatcaagcgcagtacagacaagggtgtggagagcatc
tttgacatcatggagatggaggatgaggaccgcattaatcttctacagctgtccgatatt
cagatggctgatgtggcgcgtttttgtaaccgttatcccaacattgagctctcatatgaa
gtggctgacagagatgacatcaagagcggcagtccagttgttgttcaggtgcagttagag
agagaggaagaagttacaggaccagtcattgcaccgctgtttccacagaaacgtgaggag
ggctggtgggttgtgattggagaccccaaatctaacagtctcatctcaatcaagaggttg
actcttcaacaaaaagccaaggtgaaactggactttgtggccccggttgttggagtccat
aactatacgctgtatttcatgagtgatgcttacatgggttgtgaccaggagtacaagttc
agtgtggatgtgaaggaagcggacagtgacaaagacagtgactcagactga
DBGET
integrated database retrieval system
