Neoarius graeffei (lesser salmon catfish): 132893200
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Entry
132893200 CDS
T10798
Symbol
col2a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type II, alpha 1a
KO
K19719
collagen type II alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132893200 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Amnionless
Motif
Other DBs
NCBI-GeneID:
132893200
NCBI-ProteinID:
XP_060788061
LinkDB
All DBs
Position
10:complement(63629184..63662799)
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AA seq
1492 aa
AA seq
DB search
MFRFVDSRTVLLLVATQCILLAVVRCQQEDDQEDLGGCIQDGQHFEDRAVWKPEACRVCV
CDSGSVLCDEVICEELRDCSNPIIPPGECCPICPADQGLTSETFGVKGQKGEPGDIANVL
GPRGPAGPMGPPGEQGPRGERGPKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPPGPNPPG
LGGNFAAQMTGGFDEKAGAVNLGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGEAGEPG
PAGPMGPRGPPGSPGKSGSDGENGKPGKPGDRGPPGPQGARGFPGTPGLPGLKGHRGHPG
LDGTKXTGAAGAKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGP
PGPVGPAGAPGFPGAPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAAGNPGTDGI
PGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGV
SGPQGAPGPIGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLPGAKGAPGDRGV
PGSSGPKGATGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGT
RGQPGVMGFPGPKGANGEPGKPGEKGLVGSPGLRGLPGKDGETGAAGPPGPAGPAGERGE
QGQLGPPGFQGLPGPAGPPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGSAGPQGL
QGPRGLPGTPGTDGPKGAIGPAGAAGALGPPGLQGMPGERGPAGISGPKGDRGDSGEKGP
EGASGKDGARGLTGPIGPPGPSGPNGAKGETGAIGPTGAAGARGAPGDRGEVGPPGPAGF
AGPPGADGQPGVKGEQGEAGQKGDAGSAGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGA
TGFPGAAGRVGPPGPNGNPGPAGPAGPAGKDGPKGVRGDAGPSGRPGDVGLRGPPGPPGE
KGEAGEDGRSGLVGPPGPAGLAGQRGIVGLPGQRGERGFPGLPGPAGEPGKQGGPGSGGE
RGPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAPGVKGERGNTGPIGAPGAPGATGS
PGPVGPVGKQGDRGEAGSQGPAGPPGPAGARGMAGPQGPRGDKGEAGEAGERGQKGHRGF
TGLQGLPGPPGAPGDQGAPGPAGPSGAKGPPGPLGPAGKDGANGIPGPIGPPGPRGRSGE
TGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRADEASNNLRQHDVEV
DATLKSINSQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGEYWVDPNLGCTADAIKVFC
NMETGETCVKPTTSSIPRKNWWSAKSKAQKHIWFGENMGGGFHFSYGQKVPTPNVASIQM
NFLRLLSSEASQSITYYCKNSVAYMDEATGNLKKALLLQGSNDVEIRAEGNSRFTYSVLE
DGCKKHTGQWGKTVIEYKTQKTSRLPIVDIAPLDIGGANQEFGVDIGSVCFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgttcagatttgtggactcacggactgtcctgctacttgtagcgacacaatgtattttg
ctagccgttgtcagatgtcaacaggaggatgaccaggaggacttaggcggctgcatccaa
gatggccagcatttcgaggatcgcgcagtgtggaagccagaagcgtgtcgagtctgtgtg
tgtgactcggggtcagtgctgtgtgatgaggtcatctgcgaggagctgagggattgcagc
aatcccatcattccacccggagagtgctgccccatctgccctgctgaccaaggcctgact
agcgagacctttggtgtaaagggacaaaaaggagaacctggcgatattgcaaatgttcta
ggaccaagaggaccggctggccccatgggcccgcctggagagcagggaccacgtggagaa
agaggccctaagggtgagaagggaagtccaggccccagaggaagagatggcgagcccggt
actccaggcaaccctggacctcccggacctcccggaccaccaggcccaaacccacctgga
cttggaggaaactttgcagctcagatgactggaggttttgatgagaaagcaggagcagtt
aacttgggtgtaatgcaaggcccaatgggccccatgggtccccgtggtcctcctggcccc
accggagcacctggtccacaaggtttccaaggcagcccaggagaagctggcgaacccgga
cctgctggccctatgggacctcgtggcccacctggatcacctggaaaatcaggaagtgat
ggtgagaatggcaaacctggtaagcctggtgaccgtggaccccctggacctcagggagct
cgtggattccctggaacccctggacttcctggcctcaagggacacagaggacacccaggt
cttgatggcaccaaanngactggagctgctggagctaagggtgagtcaggtgcacctggt
gagaatggcgcccctgggccaatgggccctcgtggtcttcctggtgagagaggacgccct
ggaccttctggagctgctggtgcgcgtggtaatgatggtcttcctgggcctgctggtcct
cctggtcctgttggtcctgctggtgccccaggtttcccaggagcccctggttccaagggt
gaggccggacctactggcgctcgtggagctgagggagcccaaggaccccgtggagaggct
ggcactccaggttctcctggacctgctggagccgctggtaaccctggtactgatggtatt
cctggagccaaaggatctgctggtgcccctggtattgctggtgccccaggtttcccagga
cctcgtggcccacctggacctcagggagccactggacctcttgggcccaagggccagagt
ggagaccctggtatcccaggatttaagggagaggctggaccaaaaggagagaggggtgtt
tcaggacctcagggtgccccaggcccaattggtgaggagggtaagagaggacctagagga
gagcccggtgctgctggccctcttggacctccaggagagagaggagctccaggtaaccgt
ggattccctggtcaggatggtcttccaggcgctaaaggtgctcctggtgatcgtggtgtt
cctggatcgtctggaccaaaaggtgctactggagatcctggtcgtcctggcgagtctggt
cttcctggagcaagaggtctcactggtcgtccaggagatgctggacctcaaggaaaagtt
ggcccatccggtgctcctggtgaggacggtcgtcctggtccccctgggcctcagggaact
cgtggacagcctggtgtgatgggattcccaggacccaagggagccaatggtgagcctggc
aaacctggagagaaaggacttgttggcagccctggtctccgaggtttgcctggtaaagat
ggtgagactggagctgctggtcctcctggccctgctggacctgctggagagagaggtgaa
caaggacagcttggccctcctggcttccagggtcttcctggacctgctggaccaccagga
gagggtggcaaaccaggtgaccagggtgttcctggagagggtggtgcccctggtgcagtt
ggaccaagaggtgagcgtggtttccctggtgagagaggaagtgctggaccccaggggctt
cagggacccagaggacttcctggaactcctggaactgatggacccaagggtgcaataggt
ccggctggtgctgctggtgccctgggtcctcctggtctgcagggtatgcctggtgagaga
ggtcctgctggtatttctggacctaagggtgacagaggtgactctggagagaaaggacct
gagggagcttctggcaaagatggtgcaagaggtttgactggccctattggtccacctggt
ccttctggtcccaatggagctaagggtgaaactggtgctattggcccaactggagctgct
ggagctcgtggcgctcctggtgaccgtggtgaggttggacctcctggccctgctggtttt
gctggaccccctggtgctgatggccagcctggagttaaaggagagcagggagaggcaggc
cagaaaggagacgctggatccgctggacctcaaggaccctctggagcacctggtccagtt
ggcccaactggtgtctctggacctaaaggagctcgtggagcacagggagccccgggtgct
actggtttcccaggcgctgctggaagagttggaccacctggtccgaatggtaaccctggt
cctgctggccctgctggtcctgctggtaaagatggtcctaagggagtgcgtggtgatgct
ggtccctcaggaagaccaggagatgttggactgcgtggacctcctggaccccctggagag
aagggagaggctggagaggatggccgttctggtcttgttggtcctcctggtcctgcaggt
ttagctggtcagcgtggtattgttggtctgcctggtcagcgtggtgagagaggtttccct
ggccttccaggacctgctggtgagcctggcaaacaaggtggtcctggttctggtggtgaa
cgtggcccccctggccctgttggaccccctgggttgactggacctgctggagaaactggg
cgcgagggtaatcctggatctgatggtcctcctggcagagatggtgctcctggtgtgaaa
ggtgaacgtggtaacactggtcctattggtgctcctggtgctcctggtgccactggttct
cctggtcccgttggtcctgtcggcaaacagggagacagaggagaagctggatcacaagga
cctgctggacctcctggacctgctggagcaagaggcatggctggaccccaaggtccccgt
ggagacaaaggagaggctggtgaggctggagaaagaggacagaagggacacagaggattc
accggtcttcagggtcttcctggacctcctggtgctcctggtgaccagggtgctcctggt
cctgctggacctagtggagctaagggaccccctggacctcttggtccagctggaaaggat
ggtgcaaatggtatccctggacccattggaccccctggccctcgtggacgctctggagaa
actggcccagctggtcctcctggtaatcctggaccccctggtcctcctggtcctccaggc
cctggcatcgatatgtctgcctttgctgggctgggtcagactgagaagggccctgatccc
ctgcgttacatgcgtgctgacgaggcctccaacaatctgagacagcatgatgtagaggtt
gatgccacgctgaaatccattaacagccagattgaggatatccgcagccctgacggatct
cgcaagaaccctgctcgctcctgccgtgacctgaaactctgccaccctgaatggaagagc
ggtgaatactgggtggatcctaaccttggctgcactgctgatgccatcaaggtcttctgc
aacatggagactggagaaacatgtgtgaagcccactacaagcagtatcccacgcaagaac
tggtggagcgccaagagcaaagcgcagaagcacatatggttcggcgagaacatgggtggt
ggcttccatttcagctatggtcagaaggtcccgactccaaatgtggccagcattcagatg
aacttcctgagattgctatctagcgaggcctctcagagtatcacctactactgcaagaac
agcgtggcctacatggatgaggccaccggcaacctgaagaaggctcttctgctgcagggc
tccaacgatgtggaaatcagagcagagggtaacagccgattcacatacagcgtgttggag
gatggctgcaagaaacacacaggccagtggggtaagactgtgattgagtacaaaactcag
aagacatctagactgcccatcgtggacattgctcctttggacatcggtggagctaatcag
gagtttggagtggacattggatcagtctgtttcttgtaa
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integrated database retrieval system
