KEGG   Neoarius graeffei (lesser salmon catfish): 132893280
Entry
132893280         CDS       T10798                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
ngra  Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:ngra00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ngra01009]
    132893280 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ngra03036]
    132893280 (kdm5bb)
Enzymes [BR:ngra01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     132893280 (kdm5bb)
Protein phosphatases and associated proteins [BR:ngra01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     132893280 (kdm5bb)
Chromosome and associated proteins [BR:ngra03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    132893280 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID PHD zf-C5HC2 JmjN PHDvar_NSD
Other DBs
NCBI-GeneID: 132893280
NCBI-ProteinID: XP_060788215
LinkDB
Position
10:72775351..72810834
AA seq 1522 aa
MSQPRPDEFKPPPECPVFEPSWEEFADPFAFINKIRPIAEKTGICKVRPPPDWQPPFACD
VDRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLYQLNKLV
SEEGGFDTVCKERRWTKIAMAMGFAPGKAVGSHLRAHYERVLYPYNLFQSGANLLAPELA
AKLMSFGAAPEREKFVQKPSLPENGDDKEYKPHDLVRRQKVQVQPSDTCTPARRAKRMKA
ESGCGKSEGCTGGEMSENRPNLRRRMGSFVAKPEPVKEVPIQIKQEPVERDLQPEPEKTK
SRYKKSAPQAPVSVVDLYVCLVCGSGSDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWR
CPKCLAQECSKPQQAFGFEQARREYSLKSFGEMADSFKSDYFNMPVHMVPTELVEKEFWR
LVGTITEDVTVEYGADIASKEFGSGFPIRGGKFKVTPQDEKYLRCGWNLNNMAMMDPSVL
THVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGFAAEQLEA
VMKKLAPELFESQPDLLHQLVTIMNPNTLMAYGVPIYRTNQCAGEFVITFPRAYHSGFNQ
GFNFAEAVNFCTVDWMPLGRQCVDHYRLLHRYCVFSHDEMICNMATKADKLDVVLASAVH
KDMVLMINEEKELRQQIRKLGVVQCELFEYDLLQDDERQCVKCRTTCYLSALTCPCRPGE
QVCLHHAQHLCICPTSKYTFRYRFTLDDLYPMMNAVKQRADSYDEWASRVTEVLEAKLDK
KRNLSVFHTLLEESDMNGFPDNDLLRHLRVVTQDADRCSSVAQQLLNGKRQTRYRAGGGK
TQNQLTVEEMRSFVRQLYNLPCSLIQAPLLKELLNRIEDFQAHSEKVLSDEVSADSVVEI
QALLNESSEFDVYLPEVPRLRERLEIAHWLAAVRQAESSGSNPRGLTLDAMRQLIDRAVG
LTSDPAIERAMARLQELLTVSEQWEEKVQALLKARPPESVESLSDILKEIEAVPTYLPNC
LLLRDFINRATEWLKEAEALQLGGRVPVLDTLSDLVLRARAIPVQLEPLERLDALVSEVQ
AWKESAAKTFLLKNSSFTLLEVLCPRCEVGSPLKRKLKKTKGDAVSYGKKRTGRLDNLSD
VEKALSESKDSASAMATLAEVRLKELESLVSLRAANESKLLPAADCGALKVCVCQKPPMG
AMRQCELCRDAFHSVCVRGHGDPCESKPWLCPLCRRSAKPALDRIVPLMASLQRIRVRLP
EGDALRYMIERTVDWQRRAREVMASYNLTMTAQDHQGRRWAGDSSAKGQDWSKSSQEQSV
FYIEQRCIPLQGLSTELEELMVEGLLLQVSLPETQQLYTLLLNGPLTQCSPQHTHSATDS
SQHTPYHTQEHTSPHKERDLVTPAEKKAKRRMEREEMGLKTEARERGIPKKKKQRMRKEK
RKERKAASVSASPTYLSDVSQSDDSEEDMILCPAESCLQPAGDEVFWVQCDCCNQWFHMI
CVGVSEKIAAEEDYMCVACSAR
NT seq 4569 nt   +upstreamnt  +downstreamnt
atgagccagcctcggccggacgagtttaagcctcctccggagtgcccggtcttcgagccc
agctgggaggaattcgcagatccattcgcgtttatcaataagattcggccgattgcggag
aaaacagggatctgtaaagtccgaccgccgccggactggcagcctccatttgcatgtgac
gttgaccgacttcatttcactcctcggatccagagactcaacgagttggaggcacagacg
agggtcaaacttaattttctggaccagattgctaaattctgggagcttcagggatgcact
cttaaaattccacatgtagagcgaaagatactagatctataccagctaaacaagctggtt
tcagaagagggaggttttgatactgtatgtaaggagcgcagatggacaaagatcgccatg
gcaatgggctttgcgcctggaaaggcagtaggttcacacctgcgtgctcactatgaaaga
gtcctctacccttacaacctctttcagtccggggccaacctgctggctccagagctagca
gccaaactgatgagttttggggctgctcctgagcgggagaagtttgttcagaagccttcc
ctcccggaaaatggtgatgataaagaatataaacctcatgatctggtgcggcggcaaaag
gtgcaggtgcaacccagcgatacatgcacgcctgccaggagagccaagcggatgaaagct
gagtctggctgtgggaagtcagaggggtgtacaggaggagagatgtctgagaacaggccc
aatctcaggagacggatgggctcttttgtagcaaagcctgaaccagtaaaggaagtaccc
attcagattaaacaggagcctgtggagagggacctgcaacctgagccagagaaaaccaaa
tcacgctataagaaaagcgctccacaagcacctgtcagtgtcgttgacctgtatgtgtgt
ttggtatgtgggagtggtagcgatgaggataggctgttgctatgcgatggctgtgatgac
agctaccatactttctgcttgattccaccccttcatgatgtccctaagggtgactggagg
tgccccaagtgtctggcacaggaatgcagtaagccacagcaggcatttggcttcgagcag
gcacgcagagaatactcgctcaaatcgtttggagaaatggctgactcatttaaatctgac
tacttcaacatgcctgttcacatggtgcccactgagctggtagagaaagagttttggcgg
ttagtgggcactatcacagaggatgtgacggtggagtacggagccgatattgcttctaag
gagtttggcagtggttttcccatcaggggtggcaagttcaaggttacaccacaagatgag
aagtacttgagatgtgggtggaatctgaataacatggcaatgatggatccatctgtgctg
acccatgtgacggctgatatatgtggcatgaccctgccttggctgtatgtgggcatgtgc
ttctcctctttctgctggcatatcgaggaccactggagctactccattaactacctacat
tggggagagcctaagacgtggtatggagctccaggatttgctgctgagcagctggaggca
gtgatgaagaagctggcacctgagctatttgagtctcagccagatctcttacaccagctt
gttaccatcatgaaccctaacacgctcatggcctatggagtaccaatttacaggaccaat
caatgtgcaggagagttcgtcattacattcccgagagcctatcacagtggttttaatcag
ggcttcaactttgcagaggctgtaaacttctgcactgtggattggatgcctttgggccgt
cagtgtgtggatcactaccgcttgctgcatcgttactgtgtgttctcgcacgatgagatg
atctgtaacatggctaccaaagctgataaattggatgtggttctggcttcagctgtgcac
aaagacatggtgctaatgatcaatgaagagaaggaactccgacagcaaattcgcaaattg
ggagtggtgcagtgtgagttgtttgaatatgatttgctgcaggatgatgagagacagtgt
gttaagtgtcgcaccacctgctacctgtctgctctcacctgtccatgtcggccaggtgag
caggtgtgtctacaccacgctcaacacctctgcatctgccctacctccaaatatacattc
aggtatcgcttcacgctggatgacctctaccccatgatgaatgctgtgaagcaaagagct
gactcgtatgatgagtgggcatcacgtgtaaccgaggtccttgaggccaaactggacaaa
aagcgcaacctgtctgtgttccatactctgcttgaggagtccgatatgaatggtttccca
gataatgatctgttgcgtcacctgagagtggtcactcaggatgcagacagatgttcgtct
gtggcgcagcagcttctcaatggcaagagacagaccaggtatcgtgctggtggaggaaaa
actcagaaccagttgactgtagaggaaatgaggtcatttgtgcggcagctttacaacctg
ccctgcagcctaattcaagcaccattactgaaggagttgctgaaccgtatcgaggatttc
caagcacacagtgagaaagttctgtctgatgaagtcagtgcagattctgtggtggagatc
caggcccttctaaacgagagctcagagtttgacgtgtatctgccggaggttcctcggcta
cgggagcgtctggagatcgctcattggttagcagcagtgcgccaggctgagtcgtcgggc
agcaatccccgtggcctcactctagacgccatgcggcaactgattgaccgtgctgtgggg
ttaacttctgaccctgcgatagagcgtgccatggctcgtctgcaggagctgctcactgtg
tctgagcagtgggaggaaaaagtgcaggcactgctcaaagccagacctccagagagtgtg
gaatctctgtctgacattctgaaagagattgaggccgttcctacgtacctgcccaactgt
ctgttgctgcgagactttattaacagagccacagagtggctgaaggaggctgaggctctg
cagttgggagggcgtgtccctgtgttagacacactgtctgacttggtgctgagggcccgg
gcaattcccgtgcagctggagccactggagaggttggacgcacttgtgtctgaggtgcag
gcatggaaggagtctgcagccaaaacctttctcttgaaaaactcctctttcaccttgctg
gaggtgttgtgtccacggtgtgaggtgggaagccctcttaaaagaaagttaaagaagaca
aagggagatgcagtgtcatatgggaaaaagagaacagggagactggacaatctcagtgat
gtcgagaaagccttgtccgagagtaaagactcggcttctgctatggcaactcttgctgaa
gtccgtttgaaggagctggagtccttggtgtctctccgtgcagctaacgaatctaaactc
ctaccagcagctgactgcggcgcactcaaagtgtgtgtgtgccagaagcctcccatgggt
gccatgcgccagtgtgagctgtgtcgtgatgctttccacagtgtatgtgtacgtgggcat
ggggacccttgtgagtccaagccgtggttgtgtcctttgtgtcggcgttcagcgaaaccg
gccttagacaggatcgtgccattgatggcgtctctgcagaggatccgtgtgcgtttacca
gaaggagatgcgctgcgctacatgattgaacgcacagtggactggcagcggcgagcacgg
gaggtaatggcctcgtataaccttacgatgaccgctcaggatcaccagggaaggcgctgg
gcaggggacagcagtgcaaagggccaggactggagcaagagcagtcaggagcagtctgtc
ttttacatagagcagcgctgtatccctctgcagggtcttagtacagagctggaggagctg
atggtggaaggattattgctgcaggtatcactgcctgagactcagcagctgtacacgctg
ctactaaacggccccctgacccagtgcagtccacagcatacacactcagcaactgacagc
tcacaacacacaccctatcacactcaggaacacacttcaccacacaaagagagggatctc
gtgaccccagcagaaaagaaagcaaagcggcggatggagagagaagagatggggctgaag
acggaagcgagggagcgagggatcccgaaaaagaagaagcagcggatgagaaaggagaag
aggaaagagaggaaggcagcgtcggtgtctgcatcacccacttacctgtctgatgtatcg
cagtcagacgattcggaggaagacatgatcctctgcccagctgaaagctgccttcagcct
gcaggagatgaggtgttctgggtacagtgtgactgctgtaaccagtggtttcacatgatc
tgtgtaggagtttctgaaaagatagcagccgaagaggactacatgtgtgtcgcctgcagc
gcacgttaa

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