Neoarius graeffei (lesser salmon catfish): 132893388
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Entry
132893388 CDS
T10798
Symbol
hcfc1b
Name
(RefSeq) host cell factor 1b isoform X1
KO
K14966
host cell factor 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03083
Polycomb repressive complex
ngra04980
Cobalamin transport and metabolism
ngra05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
132893388 (hcfc1b)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
132893388 (hcfc1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
132893388 (hcfc1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ngra01009
]
132893388 (hcfc1b)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ngra03036
]
132893388 (hcfc1b)
03029 Mitochondrial biogenesis [BR:
ngra03029
]
132893388 (hcfc1b)
Protein phosphatases and associated proteins [BR:
ngra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132893388 (hcfc1b)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
132893388 (hcfc1b)
HMT complexes
COMPASS/SET1 complex
132893388 (hcfc1b)
MLL-HCF complex
132893388 (hcfc1b)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
132893388 (hcfc1b)
Mitochondrial biogenesis [BR:
ngra03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
132893388 (hcfc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_ATRN-LZTR1
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
132893388
NCBI-ProteinID:
XP_060788446
LinkDB
All DBs
Position
10:84913722..84953942
Genome browser
AA seq
1940 aa
AA seq
DB search
MASSGTNTTSSGSGSVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDE
LHVYNTATNQWFIPAVRGDVPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRW
EWKRLKPKAPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLEL
RPGSNVAGWDIPITYGVLPPPRESHTAVVYTEKTSKKSRLVIYGGMSGCRLGDLWTLDID
TLTWNKPAISGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLAC
LNLDTMSWETILMDTLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCCKDLWY
LETDRPLAPSRVQLVRANTSSLEVSWGAVPTADAYLLQLQKYEIPAATAASSPSVTPTSS
LPSNSPKSPAPAAAAPASQSVPVTGVTLIPQVPSPTMSMPGSPLAAASPRGPGKTILKVA
APQSAAGTSIVTVRQANQVGKSPVTVASLPAGVRMVVPAQSAQGTPIGSSPQMSGMAALA
AAAAATQKIPPSSTATVLNVPAGATIVKTVAVTPGSAALPATVKVASPVTVSNPATRMLK
TAAAQAGTSTITTPNTPTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPLTVG
SGGTLISSLGKVMSMVQTKPVQTSAVTGQAGSPVTQIIQTKGPLPAGTILKLVTSADGKP
TTIITTTQASGTGTKPTILGISPTTTTKPGTTIIKTIPMSAIQQGAAGATSSTGIKSPIT
IITTKMMTPGTPGKIITAVPKLAAGTAQQGVTQVVLKGAPGQPGTILRTVPMGGVRLVSP
GTVSAVKPTVTTLVVKGTTGVTTLGTVTGTISTSLAGGNATANASLATPITTLGTIATLS
SQVISPAAITVSAAQTNLTTTPTVAIQAATQPTQVTLISTPSGVEAQQDLPVSILASPTS
EQPSTTGAEAGDASGEVTLACSNPPCETHETGTTNTATTASAKIGTERVCSNPPCETHVT
GTTNTTTTASADMGCVQQVCSNPPCETHETGTTNTSTQASSNMGMETNTVQRVCSNPPYE
THETGTTNTATQASSSMGSAETNTVQRVCSNPPRETHETGTTNTATQASSSMGSAETNTV
QRVCSKLPCETHETGTTNTATQASSSMGSAETNTVQRVCSKLPCETHETGTTNTATQASS
SMGSAETNTVQRVCSKPPCETHETGTTNTATQASSSMGSAETNTVQRVCSNPPCETHETG
TTNTATQTSLSMGNAETNTVQRVCSNPPCETHETGTTNTPTQASSTIGVGQNGMVQRVCS
NPPCETHETGTTNTATTATSSLESAEGSAQQSGNGQDTGTSAEATSSTEPANPPIQSRAI
TTVTQATPTPGPSVPEISSMASSAAVVEGSGEAEAMEQGDSEAVAMGEEPMQTEGELGEE
GAVRVVAIEEGAAGEAGTMLQVHVAMEAQPGQGEQAEMEQGGDSAEAVALSGQDSEALAL
PQELMSAEGQQTTLMVTGLTPEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVLN
EGDAGHDGQQATTIPIVLTQQELAALVQQQQQLQEVQAAAAAAAQQLGADSGAGPLPTEG
LAPADSLNDPTTESNGHEMAAAAVTGTVVQLLPSTSAETLAPSSTLTPVQPMVAASPAKI
QAATALAEVANGIESAAGQKPGAPPAVVKPPVKKENQWFDVGIVKVTNMVVTHYYIPADD
SEVTDDDSGTIPDYSQMKKVELSPGTAYKFRVAGINACGRGTFSEVSAFKTCLPGFPGAP
CAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQTTEAKASAPAQLAFMRVYCGP
NPSCLVQTSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDGSAAKPAAK
RPVSSPDTKGTGPKKARADQ
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctggtaccaacaccacatcgagcggttcgggctcagtgttgcagccgagg
tggaagcgggtgctcggatggtccgggccggtgcctcggcctcgtcacggccaccgcgcc
gtcgccattaaagagctgatggtcgtctttggcggcggcaatgaaggaatcgtggatgaa
cttcacgtttacaacactgcgactaatcagtggtttatcccggctgtccggggcgatgtg
ccacccggctgtgctgcgtatgggtttgtgtgtgacggcacccggcttttggttttcgga
ggaatggttgaatatggaaaatacagcaatgatctctatgagcttcaggccagtagatgg
gagtggaaacggctgaagcctaaagctccaaagaacggcccgcctccttgtccacgcctg
ggtcacagcttctccctcgtcgggaataagtgctacctattcggcggacttgccaatgac
agcgaagatcccaaaaacaatattccaagatacctgaatgacctgtacacactcgagctg
cgtccaggctctaacgtggcaggctgggacatccccatcacatatggcgtgcttcctcct
cctcgcgagagtcacacagctgtagtctacacagagaaaacctcaaagaagtctcgcctt
gttatctacggaggcatgagcggctgccgcctcggagacctctggacattagatatagac
acgcttacttggaacaagccggcgatcagtggcactgctccgctccctcgcagtcttcac
tctgccaccaccataaccaacaagatgtatgtgttcggcgggtgggtgcccttagtgatg
gatgatgtgaaagtggctacacatgaaaaggaatggaagtgtacaaacacactggcatgc
ctaaatctggacacaatgtcatgggagactattttaatggacactctggaagacaacatc
ccaagagccagggcagggcactgctccgtagctatcaactcccgactgtatgtttggagt
ggcagagacggataccgcaaagcctggaataaccaagtgtgctgcaaagacctctggtat
ttagagacagaccgtcctctggcaccgtctcgtgtgcagctggttcgtgccaatacaagt
tctctggaggtgagctggggcgctgtacctactgccgacgcctacctgctgcagctgcag
aaatacgaaattccagcagcaacagcagcctcttcccccagcgtcactcccacttcctcg
ctgccctccaactcgcccaagagcccggccccggccgccgcggcccctgcctctcagagc
gtgcccgtcacaggggtcaccctcataccccaggtgccctcaccgaccatgtccatgcct
gggagcccgctcgctgcagcctcaccacgtggtccaggtaaaaccattttgaaagtagca
gcacctcagtccgctgctgggacgtctatcgtcactgtgcgtcaggccaatcaagtggga
aaatctccagttacagttgcatcgcttcctgctggagtgcgtatggtcgttcctgcacag
agcgcacaaggaacaccgattgggagcagccctcagatgagtggcatggccgctctggct
gcagctgcagctgccacacagaaaatcccaccatcatcaacagccacggtgctgaacgtt
ccagcaggagccaccattgtgaaaactgttgccgtcactccaggctctgcagctcttcct
gctacagtgaaagtagcatcaccagtgactgtgagcaacccagctacccgcatgctaaag
acagctgcagctcaagctggaacttcgaccatcacgacccccaatacgccaacacgcccc
attatcactgtgcacaaatcgggcacagtgactgtagctcagcaggcacaggtggtcacc
actgtggtgggaggagtcactaaaaccatcacactcgtcaagagcccgctcactgtgggc
agcggtggcactctgatctctagcctggggaaggtgatgtccatggtccagacaaaacca
gtacagacttctgcagtgacgggccaagctgggagccctgtcacacagatcatacagacg
aagggtcctctgcctgcaggcaccatattgaagctagtcacctcagcagacggcaagccc
accaccatcatcactaccacgcaggcaagtggcactggcaccaaaccaaccattctgggc
atctccccgaccaccactaccaagcctggcaccaccatcatcaagaccatcccgatgtct
gctattcagcaaggagctgcaggtgctactagcagcactggtatcaagtctccgatcaca
atcatcacaaccaaaatgatgactcctggcacaccaggaaaaattatcaccgcagtacca
aaactggctgctggaactgcacagcagggagtgactcaggtggtcctgaagggggcgcca
gggcagcctggcaccattcttcgcactgtgcctatgggtggtgtgcgtctcgtttctcct
ggtactgtttctgctgtcaaacccacagttactacattagtggttaaaggcaccacagga
gtaactactctcggcactgtgactggaacaatttcaaccagcctggcagggggcaacgct
actgccaatgctagcctggctactcccataaccaccttgggcaccatcgccacactctcc
agccaggtgatcagcccagcagctatcacagtgtctgcagcccagacaaacctgactact
acaccgacagtggccatacaggcagctacacagcccacacaggtgactctgataagcacc
cccagtggcgtggaggcgcagcaggaccttcccgtatccatcttggcctcccccacctct
gaacagccctccaccacaggcgctgaagcaggcgatgcctcgggtgaagtgactctagcc
tgctccaacccaccatgcgagacccatgaaaccggcaccaccaatactgccaccacagct
tctgctaagattggaacagagcgtgtgtgttctaacccaccttgtgagacgcacgtgact
ggaacaaccaatacgacgaccacggcatcggccgacatgggctgcgtgcagcaagtatgc
agcaacccaccgtgcgaaacacatgaaacgggcaccacaaacacatctacacaggcatcc
tcaaacatgggtatggagaccaacacggtacagagagtgtgttccaacccgccttatgag
acccatgaaaccggcaccaccaacaccgctacgcaggcatcttcgagtatgggcagtgca
gagaccaacacggtacagagagtgtgttccaacccgcctcgcgagacccatgaaaccggc
accaccaacactgctacgcaggcatcttcgagcatgggcagtgcagagaccaacacggta
cagagagtttgttctaagctgccgtgtgagacccatgaaaccggcaccaccaacaccgct
acgcaggcatcttcgagcatgggcagtgcagagaccaacacggtacagagagtttgttct
aagctgccgtgtgagacccatgaaaccggcaccaccaacaccgctacgcaggcatcttcg
agtatgggcagtgcagagaccaacacggtacagagagtttgttctaagccaccgtgtgag
acccatgaaaccggcaccaccaacaccgctacgcaggcatcttcgagcatgggcagtgca
gagaccaacactgtacagagagtgtgttctaatccgccttgtgagacccatgaaaccggc
accaccaacactgctacgcagacgtctttgagtatgggcaatgcggaaaccaacactgta
cagagagtttgttctaacccgccgtgtgagacccatgagactggcaccactaacacaccc
acacaagcttcatccactattggcgtggggcaaaacggcatggtgcagagagtgtgttcc
aacccgccatgtgagacccatgagacgggcaccaccaacactgctactactgccaccagc
agcctcgagtcagccgaaggatcagcgcaacagagtggtaacggacaagacactggcacc
agcgctgaggcgacttcttcaacagaacctgccaatcctccaattcagagcagagccatc
accacagtgacgcaggccacgcccactccaggaccttctgttcctgaaatctcatccatg
gcaagctctgctgctgtcgtggagggatctggcgaagccgaggcaatggagcagggagac
tctgaggcagtagcgatgggcgaggagcccatgcagaccgagggtgaactgggtgaagag
ggggcagtcagagttgttgctattgaagagggtgctgctggtgaggcaggcaccatgctg
caggttcacgttgccatggaagcacagccgggtcaaggagagcaggctgagatggagcag
ggtggtgatagtgcagaggccgtggctctgtcagggcaggactctgaggccttggcactg
cctcaggaactgatgtcggccgaggggcagcagaccacgctgatggtgacgggactgacc
ccggaggaactggccgtcaccgctgcggcagaagctgctgctcaggctgcagccacagaa
gaggcccaggcgctcgccatacaggctgtgttgcaggcagcccaacaggctgtgctcaat
gaaggagatgcaggacatgatggtcagcaggccaccaccattcccattgtactgacgcaa
caggaactggctgctctggtccagcagcagcagcaactccaggaggttcaagcagcagca
gctgccgctgcccagcaactgggggccgattcgggtgcggggcctctgccaactgagggc
ctggcacctgcagacagcctcaacgaccccacaacagaaagcaacggccacgagatggcc
gctgcagcagtaactggaaccgtggttcagcttctacccagcacttctgcagagactttg
gctccatcgagtacacttaccccagtccagcctatggtggctgccagccctgccaagata
caggctgctactgcgcttgctgaggtggccaatggcatcgagtctgcagcagggcagaag
ccaggagcgccccctgcagttgtgaaaccgccagtgaagaaagaaaatcagtggtttgat
gttggaatagtcaaggtgacgaacatggtcgtcacacactattatatcccagcagatgat
tcggaggttacggatgatgattctgggaccataccagactacagtcaaatgaagaaggtg
gagctctctcctggcaccgcgtacaaattccgtgtggctggaattaacgcttgtggccgt
ggaacgttttctgaagtgtctgcattcaagacctgcttgcctggtttccctggagcaccg
tgtgccattaaaatcagcaagagccctgatggtgctcatctcacctgggaacctccgtct
gtgacatcagggaagatcatagagtactccgtctacctggccatccagagctctcagacg
accgaggcaaaagcatctgccccggctcagctggccttcatgcgggtgtattgtgggcca
aacccctcctgcctagtccagacttccagcctgtccaacgcccacatcgactacacaacc
aaacccgccatcatcttccgcattgccgcccgcaacgagaagggctacggccctgctacg
caagtcaggtggcttcaagaaaccagtaaagatggatctgctgccaaacctgcagcaaag
agaccggtctcatctcctgatacgaaaggtaccggtccaaaaaaggccagagccgaccag
tga
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