Neoarius graeffei (lesser salmon catfish): 132893390
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Entry
132893390 CDS
T10798
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ngra01009
]
132893390 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132893390 (hdac6)
04131 Membrane trafficking [BR:
ngra04131
]
132893390 (hdac6)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132893390 (hdac6)
Enzymes [BR:
ngra01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
132893390 (hdac6)
Protein phosphatases and associated proteins [BR:
ngra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132893390 (hdac6)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
132893390 (hdac6)
Membrane trafficking [BR:
ngra04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
132893390 (hdac6)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
132893390 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
132893390
NCBI-ProteinID:
XP_060788452
LinkDB
All DBs
Position
10:85016878..85090233
Genome browser
AA seq
1103 aa
AA seq
DB search
MDSVSDQTPKGSNSKRSPKKSPQSSGKRENRKRSQKPSLQEARNKGRRDRGKAEEEMTNK
LKNMDLLDKPKATGTGLVYSDAFSRYHCLWDSSHPECPERVSAIVGMMETEGLLSRCMQV
ETRSASEGELSLIHTKEYIDLMRSMQKMTEEELKCVSDRYDSVYLHPESFSCACLAAGSV
LQLVDKVMTSELRNGFAVCRPPGHHAQAEQMNGYSMFNNVAVAARYAQKCHGVQRVLIVD
WDVHHGQGIQYAFQDDPSVLYFSIHRYEEGSFWPHLPEGDSSAVGSGPGEGYIINVPWNK
IGMEDGDYVSAFQRILLPVAYEFQPQLVLVAAGFDSVAGDPKGEMCASPQCFSVLTHMLM
GLAKGRIVLSLEGGYNLQATAEAACASLRSLLGDPCPHLNSPGAPSESALKSISKTVSAL
YPFWTSLQTLEGGPLSEAEPLPSAVCVDKLETSVRVTGLVYDERMMEHHNMWDSHHPELP
QRIFRIFSHHEDLGLVDRCQRIPARLATEEELALCHGSEHIATIKSTKQMKPRDLNRLGD
EYNSVYISKESYKCALLAAGACFNVAQSILTGQVRNGVAIVRPPGHHAERDTAGGFCFFN
TAALTARYAQSITHNALRVLILDWDVHHGNGTQHIFEDDKSVLYISLHRYEEGSFFPCSE
DANYDKVGRGKGVGYNVNIPWNRAKMGDSEYLAAFHHVVMPIAREFAPELVLVSAGFDAA
RGDPLGGYQVTPECYAHLTHQLLSLAAGRVLVILEGGYNLTSISTSMAMCTSMLLGDTPP
LLPPLPPPHPSAAISINNVLRAHAPYWRSLRIQIPESLRLSLPSPKPKIKHTPAGKGRTS
PPRVTPEQQYQRIPVTTSPASPPTDQEDSGLDELTQGLRSLDLSTSTISASSSPASIPVG
GARPKMKPSPQRDSLTVQEGSPVRGTESGIEDGDVKAESTPIKQSVQPAAEESHAGAVRD
QESPALEGACGYTKKSVFELVCGAVDMAGDTMYVVDPLAWCPHLESVRPVPAGGIDVFRP
CEECGAETENWICLSCYKVLCGRFVNEHMVAHGQMSSHPVVLSFADLSVWCYSCESYVHN
QVLYEAKNAAHLAKFGEDIPPIN
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtatcagatcaaactccaaagggttcgaattcgaaacgctccccaaagaaa
tccccacagagctctggcaagcgggaaaaccgcaaacgcagccagaaaccaagtctccag
gaggcaagaaataaaggaagacgggaccgaggcaaagcagaagaggagatgaccaacaaa
ctcaaaaacatggatttgctcgacaagccgaaggcgaccggaacaggtctggtttattcc
gatgcgttttcccgttatcactgcctgtgggactccagtcaccccgagtgtccagagaga
gtgagcgctatcgtggggatgatggagacggaggggctgctgtctcgctgcatgcaggtg
gagaccagatctgcctcagagggggagctttctctgattcacacgaaggaatacatcgat
ctcatgaggtccatgcagaagatgactgaagaggagctgaagtgtgtgtctgatcgttac
gactccgtctacctgcatcctgagtctttctcatgtgcctgtctagccgccggctctgtc
ctccagctggtcgacaaggtgatgacatcggagcttcgcaatggcttcgctgtctgcaga
cctccaggacaccacgcccaggccgagcagatgaacggatactccatgtttaataacgta
gcagtggcagcgcgttacgctcagaaatgccacggcgtccagcgggttctgattgtggac
tgggatgtgcatcacggtcagggaatccagtacgccttccaggacgatcccagtgtcctg
tatttctccatccatcggtatgaggagggctcgttctggcctcacctgcctgagggagac
agcagtgctgtgggttcaggaccaggcgagggctacatcatcaacgtgccctggaacaag
attgggatggaggacggagattacgtctcggcgttccagagaattctgctgcctgtagca
tacgagtttcagcctcagcttgtgttagtcgccgctggctttgactctgtggctggtgac
cccaagggcgagatgtgtgcgagtcctcagtgtttctctgtactcacccacatgctgatg
ggtctggccaagggccgaatcgtgctctctttggagggaggctataacctgcaggccaca
gcagaggcggcgtgtgctagtttgaggtcgctcttgggtgacccctgccctcatctgaac
tcgccaggagctcctagtgagagtgctctaaaatccatctcgaagacagtttctgctctg
tatccgttttggaccagcctgcagactctggagggaggccctctttccgaggcagagccc
ttaccctcagccgtgtgtgtggacaaactggaaacctctgtccgagttactggacttgtt
tatgacgagcgtatgatggagcatcataacatgtgggacagccatcaccctgagctccct
cagagaatcttccggattttctcccatcatgaggatttggggctcgtggaccgttgccag
cggataccggctcgtttagccacggaagaggagctcgcactttgtcacggatctgagcac
attgcgacgataaagagcaccaagcagatgaagcccagagacctgaaccggctcggagac
gaatataactctgtctacatcagtaaagagagttataagtgtgcgctgctggcagctgga
gcatgtttcaatgtagcacagtccatcctcactggtcaggtgaggaacggtgtggctatc
gtccgtccccctgggcatcacgcagagagagacaccgctggtggattctgcttcttcaac
acagctgccctgaccgcccgctatgctcagagcatcacccacaatgccctgcgtgtcctc
atcctcgactgggacgtgcaccatggcaacggcacccaacacatatttgaagacgataaa
agtgtgctctacatctctctccatcgctatgaagaaggctcgttcttcccctgctcagag
gacgccaattacgataaagtgggccgagggaagggtgtgggttacaacgtgaacattccc
tggaacagagccaagatgggtgactcggaatacctagccgccttccaccatgtagtgatg
ccgatagcacgagagtttgctccggagctggtgctggtgtcggccgggtttgatgccgct
cggggcgatcctttaggggggtaccaagtgaccccggagtgctacgcccacctcacacac
cagctgctgagtctcgcagcaggacgagtgcttgtcattttagagggaggttataacctc
acgtccatctccacatccatggccatgtgcaccagcatgctcctgggtgacacgccccca
ctgctgcctcctctgcctcctcctcaccccagcgccgccattagcatcaacaacgtcctg
cgagcacacgccccctactggagatctctcagaatacagattccagagtccctgcgtttg
tccttgccttctcctaaacctaaaatcaagcacaccccagcaggaaaaggcagaacttct
cctcctcgggtcactcctgaacagcagtaccagcgtatcccagtgacgacttcaccagca
tcgccccctactgatcaggaggactcagggctggatgaactcacccaaggcctgcgctct
ctagacctgagcacgtctacgatatctgccagttccagccctgcctccatccctgtgggt
ggggctagacctaaaatgaagcctagcccacagagggattccttaacagtgcaggaggga
tcgcctgtccgagggactgaaagcggtatagaggacggtgatgtaaaagctgagtccacg
cccatcaaacagtcagtacaaccggcggctgaagaatcgcacgctggggctgtgcgtgat
caggagagtcctgcgctggagggagcgtgtggttacacgaagaaatccgtctttgagctt
gtgtgtggagccgtggacatggccggggataccatgtacgtggtggaccctttggcatgg
tgcccacacttggagtcggtgcgtccggtgccagcagggggcatcgacgtgttccggccg
tgtgaggagtgcggcgctgaaacggagaactggatctgcctcagctgctacaaggttttg
tgtgggcgttttgtgaacgagcacatggtggcacatggtcagatgtcctctcaccctgtg
gtcctgagctttgccgatctctcagtgtggtgctactcctgcgagtcctacgtccacaac
caggtgctgtatgaagccaagaacgctgctcatcttgccaagttcggggaggacattccc
cccatcaactaa
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