Neoarius graeffei (lesser salmon catfish): 132893842
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Entry
132893842 CDS
T10798
Name
(RefSeq) polyadenylate-binding protein 1-like 2
KO
K13126
polyadenylate-binding protein
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03015
mRNA surveillance pathway
ngra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132893842
09123 Folding, sorting and degradation
03018 RNA degradation
132893842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132893842
03041 Spliceosome [BR:
ngra03041
]
132893842
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132893842
mRNA cycle factors
Stress granule specific factors
132893842
Spliceosome [BR:
ngra03041
]
Complex C
Other components
Complex C specific factors
132893842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RBD_DEAH11
RRM_3
RRM_10
RRM_occluded
RRM_RdRP1_2
Metallophos_2
NUDIX_4
YflT
Motif
Other DBs
NCBI-GeneID:
132893842
NCBI-ProteinID:
XP_060788982
LinkDB
All DBs
Position
11:complement(41501738..41505667)
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AA seq
342 aa
AA seq
DB search
MNTNSVIAALYVGDLHAKVTEPMLIEKFSPAGPIHSIRLCRDRMTGSSLGYAYINFYRRA
DAERALEMLNFELLMGQPMRLMWSQRDSSLRSSGIGNLFINNLDKSIDSMALFDTFSLFG
KILSCKVVCNEKRPVGYGYVQFESAEAADLAKETLNGKLLNGRKVFIEYFKSREKRMAER
SQRHKVLSKIFIKNFDEDLDNKKLKDIFKKFGPVANVRVVNDENGKSRFGFIKFVRNEDA
QKAVDEMNGKELNGKTVYVGHTQSKAERQADLRYKHEQVNTHTHTHTHTHTHTHTYTHTS
LTLPFLLQGLNLYVKNLDGHVDDECLRKEFLQFGTIISAKVI
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaacacaaattctgtgatagctgcactatatgtgggggatctgcacgccaaagtgaca
gagcccatgcttatagagaagttcagtcctgcaggacccattcactccatccggctgtgc
agggacaggatgacaggctcctcacttggctatgcgtacatcaatttttaccgtcgggcc
gatgctgagcgagcactggaaatgctcaactttgagctcctcatgggacagcccatgcgc
ctaatgtggtcccagagggattcatcgctgaggagcagtggcattggaaacttgttcatt
aacaatttggacaagtcaattgacagcatggccctgtttgacaccttctccctctttgga
aagatcctgtcgtgcaaggttgtttgtaatgagaaaagaccagtagggtatggttatgtc
caatttgaatctgctgaggcagcggatttagcgaaggagacactaaacggcaaactactg
aacggccgtaaagtgtttattgaatactttaaatcccgtgagaagcgcatggctgagagg
agccagcgtcacaaagtcctcagcaagatcttcatcaaaaactttgatgaggacttggac
aacaagaagctgaaagatatcttcaagaagtttggtcctgtggcaaacgttcgggttgtc
aatgatgagaacgggaagtctagatttggcttcataaaatttgtgaggaatgaggatgca
cagaaggctgtggatgagatgaacgggaaggagctgaacggtaagactgtgtatgtgggc
cacacacagagtaaagcagagagacaggctgatctccggtataagcatgagcaggtaaat
acacacacacacacacacacacacacacacacacacacacatacatacacacacacaagt
ctgactctgccctttctgctgcaggggctgaacctctacgtgaagaacctggatggtcat
gtggatgatgagtgtctgcgtaaggagttcctgcaatttggaaccataatcagcgcaaag
gtcatttaa
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