Neoarius graeffei (lesser salmon catfish): 132894043
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Entry
132894043 CDS
T10798
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03013
Nucleocytoplasmic transport
ngra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132894043 (srrm1)
03015 mRNA surveillance pathway
132894043 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132894043 (srrm1)
03041 Spliceosome [BR:
ngra03041
]
132894043 (srrm1)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132894043 (srrm1)
Spliceosome [BR:
ngra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
132894043 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
132894043
NCBI-ProteinID:
XP_060789256
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All DBs
Position
11:3025304..3049092
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AA seq
798 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFADCLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVVEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKLRQESLAVMKKVDEDKRDRESKEKAQSRSPKRRKSRSPAKRERKRSHS
RSPRHKPSPPALPLPSPPSHKPEPQPEPDQSESSKPEPLIQEASSTSDLTNDAKPDSVSE
VPKDVSPEKPVKTEDKPKPRERDRDREKEGRRDRPRHRTRSRSPRPRRRHRSRSRSYSPR
RKPSPRRRMSPRRRSPPRRPPPSRHRRSRSPARRRRSRSRSSSGSSSSRSPHKRPTKRSS
ITPPRKQSRRADASPSPSRRRRSPSGSTRRPAGRHESPSPAPKPRRSDLSESEEDKLGKV
AAVDSIQQRRQYRRQNQQSSSETGSSSSSSEDEGPRRSGRGPPARNGDIRRRRSHSPVSP
RRRHRDASPRKRRSPSPRRHRSPSPRRRRSPSPPPRRRSPSPPPRRYSPPIQRRYSPSPP
PTHKRRPSPSPAPPKRSSPRSSPSPPPRSRRSPRRSPRRSPPMSSSGRQVSPQGRYPPAG
SSPQRRGQSPAHGRAIRRVSRTPEPRNTQRGSQSPRPMRRRSSRSHSASPDHFPAASSAA
SRSLKRPAPASPSPARSASGSPPLPPLPPPAKKASSASPSPSPNKNSDVDVSKKKKKKEK
KHKKEKKHKKHKKHKKEKSGAAPSGDGQETTRVEDEHESDPKKESESEVEDSLDDLEKHL
REKALRSMRKAQMSPSQS
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggatttttccgcggcaccagcgcggagcaggataaccgcttcagtaacaaa
cacaagaagttactgaagcagctgaagtttgcagactgtctggagaaaaaggtggacatg
acaaaggtgaacctggaggtcatcaagccgtggatcacgcagcgcgtcacggagatcctc
ggcttcgaggatgacgtcgttgttgagttcgtcttcaaccagctggaggagaagaatcca
gatggtaagatgatgcagattaacttgaccggtttcctgaacgggaagaacgcgcgcgag
ttcatgaaggacctctggcccctgctgctgagtgcccaggagaacatcgcaggaatcccg
tccgccttcctcgaacagaagaaagaggagatcaagctcagacaggagtcactggcagtc
atgaagaaggtagacgaagataagagagacagagagagcaaagagaaagctcagtccagg
agtcccaaacggagaaaatctcgttcaccggcaaagcgcgaaaggaaacgcagccactct
cgctcgcctcgacacaaacccagcccaccagctctgcccctgcccagcccacccagccac
aaacctgagcctcagcccgagcctgaccaatcagagagctccaaaccagaaccgctgatc
caggaagcttcctcgaccagtgatttgacaaacgatgcaaaaccggattcggtatcggag
gttccaaaggacgtgtctccggagaaacctgtgaaaacggaggacaaacccaaaccacgg
gagagagaccgggaccgggagaaagaaggacgccgggatcgtccacgccatcgcacacgg
tctcgctcaccacgcccccgacgacgccaccggtcacggtcgaggtcgtactcaccccgg
cgcaaaccgagcccgaggagacgcatgtccccaagacgcaggagtcccccgagacggcca
cctccttccagacacagacgcagccgctcacctgcacgcaggagacgttcacgttctcgc
tcatcttcaggaagttcgtcttcacgctcaccccataagaggcccactaaacgcagctcc
atcacaccgcccaggaaacaatcacgccgtgctgatgcgtcccccagccccagcaggagg
cgccgcagcccatcgggttcgactcggcgacctgctggaagacacgagtcaccgtctcca
gctcctaaacccagacgatcagacttgtcagaatcagaggaggataagttggggaaggtg
gcagcggtggactccatccagcagcgacggcagtatcgcagacagaatcagcagtcgtct
tcagagactggctcatcatcctcatcctcagaggacgaagggccgagaagatcaggtaga
gggccgccagcaaggaacggcgacatcaggagaaggcggagtcactcacccgtgtcgccg
agaagacggcacagggatgcatcaccgagaaagagacgttctccgtctcctcgacgtcac
cgctcaccctcacccagacgacggaggtcaccatcacctccacccagacgcaggtcgccc
tcgcctcctcctcgccgctattcaccacccatccagcggcggtacagcccctcgcctcct
cccactcataagagacgcccttctccttcgcctgctcctccaaagcgcagcagtcctcgc
tcgtctccttctccccctccacgctcacgccgtagtccacgccgtagcccacgccgtagt
ccaccgatgtcctcttcaggacgtcaggtcagcccacagggcaggtaccctcctgcaggg
tcgtctccgcagcgacgagggcagtcccccgctcacggcagagccatccgcagggtgtcg
cgtacccctgagccacgtaacacacaaagagggtctcagagtccccggccgatgagaaga
cgctcgtctcgttcgcactctgcctctcctgatcatttcccagcagcttcatcagcagct
tccaggtctctcaagcgtccggctcctgcgtctccttcccccgcccgctcggccagcggc
tctccccctctccctcctcttcctcctccagccaagaaggccagcagtgcctcaccaagc
ccttcccccaacaagaactctgatgtagatgtcagcaagaagaagaagaaaaaggagaag
aaacacaagaaggagaagaaacacaaaaagcacaagaagcataagaaggagaaaagcggc
gccgcgccatcaggagacggacaggagaccactcgggtggaggacgagcacgaatccgat
ccgaaaaaggaatcagagagtgaagtagaggacagtctggatgatctggagaaacacctg
agggaaaaagctctccgctccatgaggaaagcccagatgtctccatcccagtcctga
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