Neoarius graeffei (lesser salmon catfish): 132895253
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Entry
132895253 CDS
T10798
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132895253 (setx)
5.6.2.5 RNA 5'-3' helicase
132895253 (setx)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132895253 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
132895253
NCBI-ProteinID:
XP_060791608
LinkDB
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Position
12:complement(19811950..19926881)
Genome browser
AA seq
2327 aa
AA seq
DB search
METCLWCTSAAESDVAVTAVLKRYCSNDMTPQEMLDANTDFIYCMECVVAYHRARERVPA
LHKRLWELETARLLEVFRETLANPEDCDLYFVDDGNEQPVPKISPEEFNIRMSFPLLEVL
KYPYLLCHRELCEMAVSVLCKMEATPYPLAVHEQCQGIYLLMVHPTEMVRRWAIATAKSL
GRVDRDNYYYLQEVFTCMFYVIDLGITVDLDINMDDSYCSGKLQMLPPHLYDSKNKKNYW
LGICMLLMQLDSQAMDSLLMGPEGQASIPLCIINTMSDCHKDVDQGSDPFWPALHCFLVI
LDRLGSKIWGQIEPLEAFQAITKAGSYINEIEDIRQKTAGTRVKVEPENHDVPLSCSQIV
YGCYSMEQTRKSSNCSSGSSDSNGNAIFEEISCLVKVLQSEMGQGMRVYGSTFLWFIPFV
RSIMELTVLNSICIGEVVHYLDNNVNKDVLSGRTRTCDKVTEFFIRILVDIIQLHLSEGC
MVVLSYFTHIWVDMVMQCATLSADICNTRIQDRMGVCSTSLHLARGTWMPADGVGAMIQA
CMKLIHTLLKEGRRTGTVPESAPFLDLINRHLRGVSARGWNLPKSEYENLKKCLLKLVKA
ISEKPEVSNVLPCAPPTPPSDPSENVISYPNATTTPPLQQLQNKDAAVGPGGPVGTIKSI
KDEPLWDQEECQSFCDGHEQIIKAKKEPCNPIPISELRPPLEVARMKPDLGKMQEIKSLL
KDQNLSKIQAIAKGRFETKGEQGTCTGLKETGNASCVSPQPSTSQSKILDSAKLGKIWND
EDDESLDVQRRCLKRSLKSTDEDSTDVRQVSMQLPRSAKGVHETNIITISVDVSSSDEKL
LENKVTGNPSLDMESSKSPGRDFDELSESQVFEFETQDYVGSAWNEPCVDIPVVTKKQKL
GNDSKACISHDALEPLGTQPVSDKDIDKVCLQVEAQIHKQQQPQEPIVPTMQVPSKESSN
EKCDFIQSKHSKSPPEKVDLIDKGKQWLSRKPPVIEAPSQKIKTHRRSHHGISPDPVKPC
SSTMLASSSVARTATPAIVPPKKVRKRVEPESVAELLGLKKKKRKAFELSQCSLVALDEL
RSHGKNVHVEPEQKSKRVHQQKGGVKKGKKFLPSQDRQYFRQSRGMVQKARPATAVAAKS
NKYPVSDTLPKSKPTSEIVEEPSDEEEDDFLPCSQPDPERRVDSKMDTGQVITSLSDDSK
KAINDCVESIKSREFSSLQNNDGGSGSMAEGAESRSESCGGSDDEWTCLTQNEPTDMELC
SQVEQMEAEYGEHLIDTGCVPMDNGSGNQANVSEGEMNVQLKPLSGNAPQKSLLDASSET
SSDDHLFSKPSMPTEHQKKAKPPTTKIYTSSSRSASLAKEMGKIANPVLAANVAKVKVAR
PPPVMLPPPAMLPPPPPKSTPQHEFCQPFPPRPTLHSPNQASTSPFNVTPAPHVPSYKTY
PRPETPVSVQTPTMGQHQRAESEKFEEPYLIQAILKWEYCMFDNYKMFGIPRHLCPFPLK
EVPVKFSNYQEYFNILYPLLLINTFEEMVSEWLKGGRMRLDLKVQGIEYSKRMAKARFTV
NLKTEQMKQSYPKDEDLVLLWLPENTGAYAHDEPVVPETSIHFGFVSRSTVSNIRGGQWS
ILDLSIQTYGNVSSVNTQLVRCERIGSLISTLREFRALCLLRNSKMAPPVLNPDIKYFAP
CQDGFPNLDMPEYNGDQAKAISCGVAVVKRKEKTPQMMLIRGPPGTGKSKVIVGILRRLL
APGQSPSVNRYGKSCRTRILLCAPSNAAIDSLMRKVISDFKANCLNIHSPQGTCGDINLV
RLGSDKTISNDLKLFSLDNQVKKDLEKGQQKNGQQKNGLDIQKRKEELDMIIDSLSEQCG
RKGKKWPMFDELNTKKLSYLKEREKLSRNFKEIDDKRHDVQSRLLLNAHVICCTLSTSGG
TLLKFAFRHLGHEPFDCVIIDEAGQAKETETLIPLLYRCQTLILVGDPEQLPPTVISQKA
KELGYDQSLMARVCKRLCTSFTRPSPSIFLSFQYRMHPYICEFPSKYIYGRNLKNDSETA
QRLCSSSWPFEPYRVFDVTDGKENREGDSFSNLKEVKLAVLLVKLLWEKQATRKEKQQIR
VGIITPYNAQKKTIQQTLEKELDNESLKKCIHLEVDTVDGFQGREIDCTIVSCVRASHEN
GSIGFVGNRQRMNVTITRAKSSLFILGHLCTLKEQSDWGALIKDAEERGFILTASESKFH
EVTKKVLKPIRYPHGHLESSNRIPILGHSDRHRDHRMHPRPSDRRPPEAYHASREQDSGN
QNFTRSMPPSRRASDPRLHQSATRSFRSLSGHYERHTTSSSSNSHRK
NT seq
6984 nt
NT seq
+upstream
nt +downstream
nt
atggagacgtgtctgtggtgtacatcagcagctgaaagtgacgtggcggtcacagcggtt
ctaaagcgctactgcagcaatgatatgacgccgcaggaaatgctggatgctaatactgac
ttcatatattgcatggagtgtgtggtggcgtaccaccgggcaagagagagggtccctgca
ctgcacaagcgtctctgggaactggagacagctcggctgcttgaagttttccgggaaacg
ttggcgaatccagaggactgtgacctgtactttgtcgacgacggtaatgagcagcccgtt
cccaagatttcccctgaagaatttaacattcggatgagcttcccactcctagaagtgctg
aaatacccttatctgctgtgccaccgggagctctgtgaaatggcagtgagtgtgttatgc
aaaatggaggctacgccataccctttggcagtacatgaacagtgtcagggaatatacctg
ctcatggtgcatccaaccgaaatggtgcgtcgctgggcaatagccactgccaagtcgttg
ggcagagtggaccgagataactattattatcttcaggaggtcttcacttgcatgttctat
gtcattgatttaggaatcactgtggacttggatataaacatggatgactcgtactgctct
ggcaagctccagatgctacctccacatctgtatgactccaaaaataagaagaattactgg
ctaggtatctgcatgttgctgatgcagctggactcgcaggccatggactctttgttaatg
gggccagaagggcaggccagcattcccctgtgcattatcaataccatgagtgactgtcat
aaagatgtcgaccagggatcagatcccttctggcctgctttgcactgtttcttggtcatt
ctagaccgactgggctcaaaaatctggggtcaaatcgaaccactcgaagctttccaagcc
atcactaaagcaggcagctacataaatgaaattgaagatatccgacagaaaacagcaggg
acaagagtgaaagtggaacctgagaatcatgatgtcccattatcctgtagtcaaattgta
tatggctgttattctatggagcaaacacgtaaatcttcaaactgttcatctggcagtagt
gactccaatggcaatgcaatttttgaagaaataagctgcctagttaaggtcttgcagtct
gaaatgggccaaggcatgcgtgtatatggtagcacctttctttggttcattccctttgtt
cgttccatcatggagctgactgtgcttaatagcatctgtattggggaagttgtccactat
ctggataacaatgtcaacaaggatgtgctgtctggacggacacgcacctgcgacaaagtc
acggagttctttatccgcatccttgttgatataattcagctgcacctaagtgaaggctgc
atggtagtgctgtcctattttactcatatatgggtagatatggtaatgcagtgtgcaacc
ctttccgctgacatttgtaataccagaattcaagataggatgggggtctgttcaacttct
ttgcatcttgctagagggacctggatgccagcagatggtgttggtgcaatgattcaagct
tgcatgaagttgattcacactctgttgaaagaagggagacgtacaggaacagttccagag
tctgcaccttttctggacctaattaacagacacctgcgtggtgtgtctgctagagggtgg
aatcttcccaaatcagaatatgagaatcttaagaaatgcttactcaagcttgtaaaagca
atatcggaaaagcctgaagtttcaaacgttctgccatgtgctccgccaacaccaccgtcg
gatccttcggaaaatgtcatttcctacccaaatgcaacaacgaccccacctctgcagcaa
ctacaaaacaaagatgcagcagttggtccaggtggtcctgtaggtacaataaaatctatt
aaggatgaaccattgtgggatcaggaggaatgtcaaagtttctgtgatggtcatgaacaa
ataattaaggcaaagaaagaaccttgcaacccaataccaatttcagaattgagacctcct
cttgaggtggctcgtatgaaaccagacttggggaaaatgcaagaaatcaaatctttattg
aaggatcagaatctttccaagatacaagccattgctaagggaagatttgaaaccaagggc
gaacaaggtacatgcactggcttgaaagagactggaaatgcatcatgtgtaagccctcag
ccttcaacctcacaatctaagatcctagactctgccaagcttggcaagatctggaacgat
gaagatgatgagtcccttgatgtccaaaggcgttgtctaaaaagatccctcaagtccact
gatgaggattcaactgatgttagacaggtttcaatgcagttgcctcgcagtgcaaaaggg
gtccatgagactaacataatcaccatttcagttgatgtttcttcaagtgatgaaaagctg
ttggaaaacaaggtaaccggtaatccctctttggacatggaatctagtaagagcccaggc
cgtgattttgatgagttgagtgaatcacaagtatttgaatttgaaacccaagattatgtg
ggatctgcctggaatgagccatgtgttgacatcccagtggtgaccaaaaagcagaaactt
gggaatgattccaaagcatgcattagtcatgacgctctggagcccttggggactcagcct
gtctcagataaagacattgacaaagtctgtctgcaagtggaggcacaaatccataaacag
caacagccacaggaaccaattgtaccaaccatgcaagtaccgtccaaagaaagttccaat
gagaaatgtgattttatacagtccaaacattccaaaagtccccctgaaaaagttgacctg
attgacaaaggcaagcaatggctgagcagaaagcctcctgttattgaagccccgagtcag
aaaatcaagactcatcgcagatcacatcacggtatatctccagaccccgtgaaaccatgt
tcttccacaatgctggcttcatcctctgttgcacgtacagccaccccagctatcgttcca
ccaaaaaaggttcgcaaacgtgttgaaccagaatctgtagcagagcttctggggttaaaa
aaaaagaaaaggaaagcttttgagttgtcacaatgttccttggtggccttggatgaactt
cgatcacatggcaagaacgtacatgttgagccagaacagaagtcaaagagagttcatcaa
caaaagggtggcgtaaagaaagggaagaagttccttccatcgcaagatcggcaatacttt
agacagagccgtgggatggtccagaaggcaaggccagccactgctgttgctgccaaatca
aacaaataccctgtatcagataccctacccaaatcaaaacctacaagtgaaattgtggag
gagccaagtgacgaagaggaggatgatttccttccctgctctcagcctgatcctgaacga
agggtggacagtaaaatggataccggtcaagtcattactagtttgtcagatgactccaaa
aaagcaataaatgattgtgttgagagcattaaaagtagagagttcagttcccttcaaaac
aatgacggtggcagtggttccatggcagaaggtgcagaatccaggagtgaaagttgtggt
ggtagtgatgatgaatggacatgccttacacaaaatgagccgacggacatggagctatgc
tctcaagtggagcaaatggaagccgagtatggtgagcacttgatagatactggctgtgtg
cccatggacaatggctctggcaaccaagcaaatgtttctgaaggagaaatgaatgtgcaa
cttaagccattatctggaaacgcacctcagaaatcgcttcttgatgcttccagcgagacc
tcttcagatgaccatttgttctcgaaacctagcatgcccactgagcatcagaaaaaagca
aagcctcctacaacaaaaatttatacatcgagttcccgcagtgcctctttggccaaagag
atgggaaaaatagccaaccctgtactggctgctaatgttgctaaggttaaggttgcacga
ccaccaccagtaatgctaccaccaccggcaatgctgccgccgccacctcccaaatccaca
ccacaacacgaattttgccaacctttcccacccagacccacactgcactctccaaatcag
gcttcaacatcaccttttaatgtaacccctgctccccatgtaccttcctataagacctat
cccagaccagaaacacctgtatcagtgcaaacgccaacaatgggtcaacatcaaagagct
gaatctgagaagtttgaggaaccttacttgatacaggctattttaaagtgggagtactgc
atgtttgacaactacaaaatgtttgggatacctcgacacttgtgtccatttccccttaag
gaagtaccagtgaagttctctaactatcaggagtacttcaacatcttatacccactcctc
ctcattaatacattcgaggagatggtcagtgaatggcttaaaggtggcagaatgagactt
gacctcaaggtccagggaattgaatacagcaaacgcatggccaaggccagattcacagta
aaccttaagactgagcagatgaagcagtcgtatcctaaagatgaagaccttgtgctcctc
tggctgccggagaacactggtgcatatgctcatgatgaaccagttgttcctgagacgagt
atccactttggatttgtgtcacgatccactgtgtcaaatattagaggagggcagtggtct
atattggatctttccattcagacgtatgggaatgtgtcctctgttaacacccagcttgta
cgctgcgaacggatcggctcccttatcagtacattgcgggaattcagagcgctgtgtttg
ttacgaaatagcaagatggcacctcccgttctcaatccagacatcaagtactttgcaccc
tgccaggatggctttccaaacctagatatgcctgaatataacggggaccaggccaaagca
atcagctgtggtgttgcagtggtgaaaaggaaggagaagaccccacagatgatgttaatc
cgcggaccaccagggaccgggaagagcaaagtcatagttggcattctgcgcagacttctt
gctcctggtcagagtccttctgtgaatcgctatggcaagtcttgcagaacgagaattctg
ctctgcgccccatcgaatgccgccattgacagcttgatgaggaaagtcattagtgacttc
aaagcaaattgcttgaacatccattctccacaaggaacctgtggtgacattaacctggtg
cgacttgggagtgacaagactatttctaacgacctaaaactcttcagccttgacaaccag
gtcaagaaagacttggagaaagggcagcaaaagaatggtcagcaaaagaatggtctggat
attcagaagcggaaggaggaattggacatgattattgactcactttctgaacagtgtggc
aggaaaggcaaaaaatggcccatgtttgacgagctgaataccaaaaagctgtcttattta
aaggaaagggaaaaactcagcagaaactttaaagagattgatgataaaaggcatgatgtc
cagtcacgtctcttgcttaacgctcatgtgatctgctgcacgctcagcacaagtggtggt
accctccttaaatttgcctttcgtcatcttggacatgaaccatttgattgtgttattatc
gatgaggcgggacaagctaaagaaacagaaacgttgatccctttgctttatcgatgccaa
accctcatcctggtgggtgaccctgagcaactcccacccacggtcatatcccagaaagct
aaagagctgggctatgaccagtcactgatggctcgggtttgcaagcgcctttgcacatct
ttcacacgtccgtctcccagcatcttcctcagtttccagtaccgcatgcacccatatatt
tgcgagttcccatccaagtacatctacggcaggaacttaaaaaacgacagtgagactgcg
cagaggctgtgttcgtcctcctggccgtttgaaccctacagagtgtttgatgtaactgat
ggaaaagagaaccgagagggagattcatttagtaacctgaaggaggtcaagctggcagtg
ctgcttgttaagctgctttgggaaaagcaggccacgcgcaaggaaaaacagcaaatacgt
gttgggatcatcactccatataacgcccagaaaaaaaccatccagcagacccttgagaag
gaactagacaatgaatcattgaaaaaatgcatacacctggaggtggacactgtggatggg
ttccagggccgtgaaattgactgcaccattgtgtcttgtgtaagagccagtcacgaaaat
ggttctatcggatttgttggtaatcgccagaggatgaatgttaccataacaagagccaaa
tccagtttgtttatcctgggacatctctgcacactcaaggagcaaagcgattggggtgca
ctaataaaggacgcagaggaacgtggcttcattctaacggcatccgagtccaaatttcac
gaggtcaccaagaaggtcctgaaaccgattcgatatcctcatggtcacctggaatcctcc
aaccgcatccccattcttggccattctgatcgacaccgagaccatagaatgcatcccaga
ccttcagaccgacgtccgccagaggcttatcatgcaagcagagagcaggacagcgggaac
caaaacttcactcgctcaatgccacccagtcgccgtgcttcagatcctcggcttcaccaa
agcgccacacgttcctttcgttccctttcaggacattacgaacgtcacactacttcttcc
tcatcaaattcacacagaaaataa
DBGET
integrated database retrieval system
