Neoarius graeffei (lesser salmon catfish): 132895750
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Entry
132895750 CDS
T10798
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03440
Homologous recombination
ngra03450
Non-homologous end-joining
ngra04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
132895750 (rad50)
03450 Non-homologous end-joining
132895750 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
132895750 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngra03032
]
132895750 (rad50)
03400 DNA repair and recombination proteins [BR:
ngra03400
]
132895750 (rad50)
DNA replication proteins [BR:
ngra03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
132895750 (rad50)
DNA repair and recombination proteins [BR:
ngra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
132895750 (rad50)
BRCA1-C complex
132895750 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
132895750 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SMC_N
SbcC_Walker_B
AAA_15
SKA1
AAA_29
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
132895750
NCBI-ProteinID:
XP_060792565
LinkDB
All DBs
Position
12:complement(82851110..82926478)
Genome browser
AA seq
1313 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQIISFFSPLTVLVGPNGAGKTTIIECLKYVTSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGELVAVQRSMQSTQKGKKAPEFKTLEGVIT
RIKHGEKVSLSSKCAELDREMISALGVSKAVLNHVIFCHQEESNWPLSEGKALKQKFDEI
FSATRYIKVLETLRQLRLKQTNTVKSCQTELKYLKQNKEKAQEIKELLSTKEAQLAASKE
SVQRIENQIDPMENRLNDIDDNLGKVMKLDNDIKALDSRKKQMEDDNHELEEKMEQVFQG
SDEKLQEMYENHQQTVKKKEKRLTECQRDLERAGRECQRMNYIKSDLLVEQGRLQMEADK
QALHIKNRDGQVKSLASYLEMEGYDRAPFSERQLQSFHKQVRERQAQDTEALNRVMIDLQ
EKETQKQQNIDEIRDKKTGLERTIELKKDIQSKKQQELKNIKADLQRLEGSSSRLQELET
ELTKAERDLEKAVRGSTVDRLKMEVQELQREKEELDQAQRKLDQEMETLNMHTAARTQMD
MLKKDKTDKDDQVRKIRSRHNEDLVSLLGHFPNKRELEDWIHNKSGEINSIREKLSKLNK
ELASREQNKSHCTAEIRRREQQLASYEEKLFNVCGSQDFESDLSKLQDDLEKCSKQRAML
AGATAVYTQFISQLTEEGEPCCPVCQRVFPSEAELQDVINDMQSKLRLVPDKLKNTEQDL
KRKERKRDDMMALKPVRQSVAELQEKDLPELKNKLQGVNREIEKLKRDIEEQESLLSLLM
SEEDTAKACLQDISLMDRYQLDLKDVERKIAQHTAKLQGVDLNRTMQHVSQEKQEVQHRL
DTTCSKMELKRKLIQDQQEQIQALKSSVNEVCAEKLQVSSNMQKQQQLEEQCVEFSAEIQ
ELHREIRDAKEQVSPLAITLEKLQHEKQDLIERRKQKQSEGQEKIDAIKERVKNLAILER
EITKYIEEGKDDYKQQKEAELQEINVQLAEAEKQREKINKDMGNIRQDIDTQKVQERWLQ
DNLTLRKRVEELKEVCKRREVLMKEMGNMKVIELRNERRELERKVEDLKNQRSVALGRQK
GFEEEILRLRKELREDQYCQAEESFRNKMIIMRTTELANKDLDIYYKALDQTIMKFHSMK
MEEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGTKRRTYNYRVVMVKGDTALDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLIITHDEDFVELLGRSNYVEHFYRIKKNQDQYSEISKCNINTLNSYLR
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaattgagaagatgagcatcctcggagtgaggagttttggagtcgaggacaag
gacaagcagataatttccttcttcagtcctctgacggttctggtcggaccgaatggagct
ggaaaaacgactattattgagtgtcttaaatatgtcacctcaggagattttccacctgga
agtaaaggaaatacctttgttcatgatccaaaggacgcccatgaaacagatgtacgtgct
cagattcggctgcagttcagagacgttaacggggagctggtagctgtacagcgttccatg
caaagcacgcagaagggcaaaaaagcaccagagttcaagactcttgaaggagtcatcacc
agaataaagcatggagaaaaggttagtctgagttcaaaatgtgctgagctagaccgtgag
atgatctcagctctgggcgtttcgaaagcagtgctcaaccacgtcatcttctgccaccaa
gaggagtctaactggcctctgagtgaaggaaaagccctcaagcaaaaatttgatgagatt
ttctcagcgacgaggtacatcaaggtgctggaaacccttcgtcagttaaggctgaagcag
accaacactgtcaaatcctgtcagacagagttgaagtatctgaagcagaataaggaaaag
gctcaagagatcaaggaactgctgtcaactaaagaagcccagctagctgcttctaaagaa
agtgtacaacgcattgagaaccagatcgaccccatggagaatcggttgaatgacattgat
gacaatctaggcaaagtcatgaaactggataatgacatcaaggctctggacagcaggaag
aaacaaatggaagatgacaatcatgaattggaggagaagatggagcaggtgtttcagggt
tcagatgagaagctgcaggagatgtatgagaatcatcagcaaacagtgaagaagaaagag
aagagactcacagaatgccagcgtgatctggagagggcaggtcgtgagtgccagaggatg
aactacatcaaatccgacttactcgttgaacagggtcgtctccagatggaagcagacaag
caggcgttgcatataaagaaccgagatggtcaggtgaagtctttagcttcttacctggaa
atggaaggatatgaccgagctcctttcagtgagagacagctccagagcttccataaacaa
gtcagagagagacaagctcaagatactgaggccctcaacagggttatgattgacctgcaa
gagaaagaaacacagaaacagcagaacattgatgagattcgtgataagaagactggcttg
gagaggaccatcgagctgaagaaggacatacagagcaagaagcagcaagagttaaagaac
attaaggctgacctacagagactggaaggttcttcatccagacttcaggagttagagact
gagctcacaaaggcagagcgagacctggagaaggctgtgcggggttccactgtggaccgt
ctgaagatggaggtgcaggagctgcagagagaaaaggaggaactggaccaggcccagcgc
aaactcgaccaggaaatggaaaccctcaacatgcacaccgcagcacgcacccagatggac
atgctgaagaaagacaaaactgataaagatgatcaagtaaggaagatcaggtccaggcac
aatgaagatctggtttctctactgggccactttcctaacaagagagagcttgaagactgg
attcataacaaatctggagagatcaactcaatcagagagaagctaagcaagctcaataag
gagctggcatccagagagcaaaacaagagtcactgtacagctgagattcgacgcagagag
cagcagctggcaagctatgaggagaagctcttcaatgtgtgtggaagtcaggactttgag
tctgatctgagtaaactgcaggatgacctggagaagtgctccaagcagagagcgatgctg
gcaggggccacggctgtgtacacccagtttatcagccagctgacagaggaaggagagcca
tgctgcccggtgtgtcagcgtgtcttcccttcagaggctgagctccaagacgtcattaat
gacatgcagtccaaactgcgtctggtgccggacaagctaaaaaacacggaacaggatctg
aagaggaaggagcgcaagcgtgatgacatgatggccctcaaacctgtcagacagtctgtt
gcagagttgcaggagaaggatctgccagagttaaagaataaactgcagggtgtcaaccgt
gaaatagagaaattgaagagagacattgaggagcaggagagtctgctgtctctgttgatg
tctgaggaggacacggccaaagcctgcctacaggacatttccctcatggatcgctaccag
ctggatctgaaggacgtggagaggaagatagcacagcatacagccaagcttcagggagtg
gacctgaaccgcacaatgcagcacgtcagccaagagaaacaggaagtccaacatcgcctt
gataccacctgcagtaagatggagctgaaacgcaaactcatccaggaccaacaggagcag
atacaggccttaaagagtagtgtgaatgaggtctgtgctgaaaagcttcaggtttccagt
aacatgcagaagcagcagcagctggaagagcagtgtgtggagttcagtgctgaaattcag
gaactgcacagagaaatacgggatgctaaagagcaggtctctccactagccatcacttta
gagaagctccagcatgaaaagcaggatctgattgagcgcagaaagcagaaacaaagtgaa
ggccaggagaagattgatgctattaaagagagagttaaaaatttggccattttagaaaga
gaaattaccaagtacattgaagaaggcaaagatgactacaagcagcaaaaagaggcagaa
cttcaggagataaatgttcagctggctgaagctgagaaacaacgagagaaaatcaacaaa
gacatgggcaatatccgacaagatatagacactcaaaaggtccaagagcgctggcttcag
gataatctgaccctgagaaagcgtgtggaagagctgaaggaggtctgcaagagaagagag
gtcttaatgaaggagatgggcaacatgaaggtcatagagctgcgcaatgagcggcgggag
ttggaacggaaggtagaggacctgaagaatcaacgcagtgtggctttgggacgacagaag
ggctttgaggaggagatcctgcgtttgcgcaaggaacttcgtgaggatcagtactgccag
gctgaagagagcttccggaacaagatgataatcatgaggaccactgagctggcgaacaag
gacctggacatctactataaagcactagaccaaacaatcatgaagtttcacagtatgaag
atggaagagatcaacaaaatcattcgagacctgtggcggagcacataccgtggacaagat
attgagtacgtggagatccgttctgacgtggatgaaaatgcctctgctggtacaaagaga
cgaacctacaactacagagtggtcatggtcaaaggagacacagccttagacatgcgagga
cgctgcagtgcaggacagaaggttttggcctcacttatcatccggttggctttggcagag
acgttctgtctgaactgtggaatccttgcactagatgaaccaactactaatctggacaga
gagaacatagagtctttagcccacgccttggtagaaatcatcaagagtcgctctcggcag
cgtaacttccagctgctcatcatcacccacgatgaggattttgtagagctcctgggtcgc
tccaactatgtggagcacttctacaggatcaagaagaaccaagaccaatactccgagatc
tctaagtgtaacatcaacactcttaacagctacctgcgctga
DBGET
integrated database retrieval system
