Neoarius graeffei (lesser salmon catfish): 132896810
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Entry
132896810 CDS
T10798
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132896810 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngra03041
]
132896810 (prpf6)
Spliceosome [BR:
ngra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132896810 (prpf6)
Complex C
U5 SnRNP specific factors
132896810 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
Suf
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
TPR_16
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
TPR_8
FAT
ARM_TT21_2nd
TPR_1
T7SS_EccA1_N
ARM_TT21_C
TPR_21
Dehydratase_MU
Mt_ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
132896810
NCBI-ProteinID:
XP_060793877
LinkDB
All DBs
Position
13:complement(47148985..47218294)
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AA seq
972 aa
AA seq
DB search
MASAAVKQPSKNPTKSAPGPAGGNVPSGPALPLASPLMGKKKKPFLGMPAPLGYVPGLGR
GATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNSQDDDDEDLNDTNYDEFNGY
AGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFSD
LKRKLAEVTEEEWLSIPDVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGENHTTVDPRQ
GQFSGLNTPFPGGLNSPYPGGMTPGAGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVD
PKGYLTDLNSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVAR
NLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRGK
KRVLRKALENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENA
RRVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAVTSLRANGVEINREQWIQD
AEECDKAGSVATCQAVIRAVIGIGIEEEDCKHTWMEDAESCVAHGAMECARAIYAHALQV
FPSKKSVWLRAAYFEKSHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARS
ILALAFQANPNSEEIWLAAVKLESENNEYERARKLLAKARSSAPTARVFMKSVKLEWVLG
NIVEAQELCSEALKHYEDFPKLWMMKGQIEEQSENMDKARDAYNLGLKKCPHSMPLWLLL
SRLEERVGQLTRARAILEKSRLKNPQTPELWLESVRLEYRAGLKNIANTLMAKALQECPN
SGILWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVK
IEPDLGDAWAFFYKFELQHGTEEQQEEVKKRCENAEPRHGELWCTESKHVLNWQKKIGEI
LVLVAGKIKNTF
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgctgcagtaaaacagccttctaaaaacccgaccaaaagcgcccctgggccc
gccggcggaaatgttccgagtggtcctgctcttcctttggcgtctccacttatgggcaaa
aagaagaagccgtttctcggaatgccagcgcctctgggctacgttcctggtctgggcaga
ggagccactggtttcaccacacgatccgatattggtcctgctcgagatgcgaatgatcca
gtggatgaccggcatgcacctccgggcaagaggacagtgggtgatcaaatgaagaagaac
agccaggatgatgatgacgaggacctgaatgacaccaactacgatgagtttaatgggtat
gctggtagcctgttctcaagtggaccttatgagaaagatgatgaagaagcagatgccatt
tatgcagcgctggacaagcggatggatgagagacggaaggaaagaagggagttgagagaa
aaggaggagatagagaaatatcgtatggagcggcccaagatccaacagcaattctcagat
ctgaagaggaaactagctgaggtgacggaagaagagtggttgagtattcctgatgtgggt
gatgccagaaacaagagacaaaggaacccacgttatgagaaactcacgccagtgcccgac
agcttctttgctaaacatctgcagactggagagaaccacactactgttgaccctcgtcaa
gggcaatttagtggtttgaacacgcctttccctgggggattaaactcaccctatccaggg
ggcatgacgccaggggctggagagctggacatgagaaagatcggccaggccagaaacacc
ctaatggacatgaggctcagtcaggtttctgactctgtgagtggacagactgtggtggac
cctaaaggctatctgacagacctcaactccatgatcccaacacatggaggtgacatcagt
gatattaagaaggcacgtctgttgttgaagtcagtaagggagacgaaccctcaccacccc
cctgcctggattgcctcagcacgtttggaagaggtgaccggcaaattgcaggtggccaga
aatctcatcatgaaaggaactgagatgtgtcccaagagtgaggatgtatggctggaggct
gcacgtctgcaaccaggagacactgcaaaggcagttgttgctcaggctgtgcgtcacctc
cctcagtctgtgcgcatctacattcgagcagctgagcttgagacagacatcaggggcaag
aaacgagtcctgcgcaaggctctagagaacgtatctaaatcagtgcgcctgtggaagaca
gctgttgaactggaggagcctgaggatgccagaattatgttgagccgagctgtggagtgc
tgcccaaccagtgtagagctgtggcttgccttggcccggttagagacttatgagaatgca
agacgtgttctgaacaaggctcgtgagaacattccaactgatcggcacatctggatcaca
gccgccaagttggaggaggccaatggcaacacgcagatggtggagaagatcattgaccga
gcagtcacctccctgagggccaatggggtagagatcaaccgtgagcagtggatacaggat
gctgaggagtgtgataaagctggcagtgttgccacttgtcaggctgtgatcagagcggtc
attggtattggcattgaggaggaagactgcaaacacacatggatggaggatgccgagagt
tgtgtggctcatggagcaatggaatgcgctcgtgccatctatgcccacgcattgcaggtc
ttccccagcaaaaagagtgtgtggcttcgagcagcttactttgagaagagtcacggtaca
cgagagtctctggaggctcttctgcagagggctgtggctcactgtcccaaggcagaggtg
ttatggctgatgggggccaagtccaagtggctggctggagatgtccctgcagcaagaagc
attcttgcactggccttccaggctaaccccaacagtgaagagatttggctggctgctgtg
aagctggagtcggagaataatgagtacgagagagcccgcaaactgcttgcgaaagcccgt
agcagcgctcccactgccagggtctttatgaagtctgtcaagttggagtgggtgctgggg
aacattgtagaagcccaagaactgtgctctgaggccttgaagcactatgaggatttcccc
aagctctggatgatgaaaggccagattgaggagcagtctgagaacatggacaaagcccga
gatgcctacaacctggggctgaagaagtgtccccactctatgcctctgtggttactgctg
tcacgtctagaggagagagtgggccagctcacacgtgctcgcgctatcttggagaaatcg
cgcctcaagaatccacagaccccagagctctggttagaatcagttcggctggagtacaga
gcaggcctaaagaacatcgctaacacgctcatggctaaagccttacaggaatgtcccaac
tcaggaatcctttgggccgaggctgtgttcttggaggctagaccacagagaaagaccaag
agcgttgatgccctgaagaaatgcgagcatgatccccatgttttactggctgttgcaaag
ttattctggagtgagagaaagataactaaagctagggaatggttcctgcgcacagtaaaa
attgagccagacctgggtgatgcctgggcgtttttctacaaatttgagctacagcatggg
acagaggagcagcaagaggaggtgaagaaacgctgtgagaacgccgaacccagacatggg
gagttgtggtgtacggagtccaaacacgtcctcaactggcagaaaaagattggagagatc
ctggttctcgtggctggcaaaatcaagaacaccttctaa
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