Neoarius graeffei (lesser salmon catfish): 132896979
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Entry
132896979 CDS
T10798
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Fn3_Dep-1_2nd
YjeF_N
Motif
Other DBs
NCBI-GeneID:
132896979
NCBI-ProteinID:
XP_060794176
LinkDB
All DBs
Position
13:59052010..59145241
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AA seq
1547 aa
AA seq
DB search
MSALVGIILLMLASEVSTQGRLKLTVLSEDRLQMKWKEVEGPVQGYKVRVKPISEVPQPE
LMLTTTRGRATVAGLDSTQEYLLQVLVLNGTVEKLIAKRRFTIDVLREEEEARSGNPKHK
RKVQAVGLGSGEMDDATEVLGSIPTALYQEPTTKEPPPVSDQGEQESKDKKKKKKDKNRT
KTKDEKVESRGKPAEEEHKVRKTTPVTAGSSHKPFGCRAGVQADLVLLVDGSWSIGRTNF
KKVREFLESLVTPFHIGPYGVQIALSQYSGDPRTEWQLNNFTSKEQLLDAVRNFRYKGGN
TFTGQALIHALEENLKEEVGARSDTPQFLLLLTDGKSQDDAVAAANRLKNAGVEIITVGV
KNADEAELKQVASEPLELNVYNVNDFPLLSKLVGRLVRILCGKMEERSKTTGRAHPTEDP
RLSYPSPTDLRYSELGPKEVRLSWTSPGRAVQQYRVVFHSSEGQSPQEVVVKGSNSTAML
TGLSSQTQYHVSIFPVYADNVGFPLRGIFTTSMLAMPESLEVTASSPSSLRVRWRAAHGA
TQYMALYSALTDGEPDDAREVKFRADETDVELRDLMPSTDYSVTVYALYDDEPSDPVTAI
ATTFPLPSPLSLQFPMVSHSSLKVTWVPGAVDVPAHRVTYSTNHGSDVKQVEVAGVNTVL
LQNLSSLSKYLVSVQSLYVKGLSAPLTGNITTLRVPAPSELRVTNYSENTLTVRWEPAAD
DVTSYLIKWISLSGGDLRQLKVDGESEGATLEGVEDDKEYQISLSALYADGAQSEAVAIR
YSTLYGGGPTSVSISEETAVSMLVSWVPPNAHVLRYHVSYTPLTGDARENKVLLPGSERR
VLLQSLLPDTRYSVLVTAEYRNREGGSASAQGKTTSLRVSSVSVVRSDHSSICVSWRPVA
AVNTYRIVIQALRDKQKKEETVESTSSSHCFYELHPETVYRISVHSRLGTVESTAVTILH
PTATAPLRAHIPPRLHPIQKEMCPEMTIRNRVIKGFNMMEAFGLTQRAHSTVEGVSVEAF
IFSTLPSYTIYRDVQLTQSTGFIHPAGFSPEHTISMAFRLLQDSPKEPFALWQLTDNDFQ
PKMGVVLDSERKVLLYFSLDYRGEVQELTFDQPQVHTLFYGSFHKIHLSISQVSVSLSVD
CQRVGERPARPLGNIPTDGFEMLGKLVRTRGPRSGSAAFQLQSFEIICNITWALEDTCCD
LPAQRDEESCPALPYACTCTSNIPGAPGDAGSPGKPGPRGQKGEKGEGGQKGEMGPPGKP
GPEGDLGPLGSLGPRGITVMGKIGRPGLRGEKGEMGKPGSQGLPGPPGPKGEEGNPGPKG
IRGVEGNMGPPGATGPRGFQGLPGHPGPVGERGPLGLVGPSGLPGIKGERGEKGEPQSLA
IIYDLVTQACEKLVHDEVLKLDAFLNEIRRNPVPVEEPVGPPGEPGMPGGKGPPGPRGPP
GRQGNGGNPGKPGYPGEQGRRGSPGEKGAPGSNVQGPPGIKGFSGPPGESKLGSPGPRGE
DGKTGIPGVPGAAGHPGESGPPGVCDNSNCHRGGPPAAEDPYYGYQP
NT seq
4644 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcccttgttgggataattcttctaatgctggcctctgaggtttctacacaaggc
cgattaaagctgacggttttgtcagaagaccggctccagatgaaatggaaggaggttgag
gggccagtacaaggctacaaagtcagagttaaaccaatctcagaagttcctcagccagag
ctgatgctgaccacaacgcgcggtcgggccactgtggcaggcctcgactccacacaggaa
tacctgctacaagtgttggtgcttaatggaactgtggagaaactcatcgccaaaagacgc
ttcacaattgatgtactgcgggaggaggaggaggcccgcagtggaaatccaaagcacaag
aggaaggtccaggctgtgggcttgggctctggtgagatggatgatgccaccgaggttctg
gggtcaatccccactgctctctaccaggagccaaccactaaagaacctcctcctgttagt
gatcaaggggaacaagagagcaaagataagaaaaaaaagaagaaagacaaaaaccgtaca
aagacaaaggatgagaaggttgaaagcagaggtaaacctgcagaggaagagcacaaagtg
agaaaaaccaccccagttacagctggatcctctcacaagccgttcgggtgcagggccggg
gtgcaggctgatctcgtcctgctggtagatggctcctggagtattggacgcactaacttc
aagaaggtgcgtgagttcctggagagcctggtgacccctttccacatcggcccatatggc
gtgcaaatcgccctgtcccagtacagtggagaccctcgaactgagtggcagcttaataac
ttcacatccaaagagcagctcctcgacgctgtccgaaacttcagatacaagggagggaac
accttcacaggtcaagctctcattcatgccctggaggaaaatttgaaggaagaggtcggg
gccaggtcagataccccacaattcctgctgcttttgactgatggtaaatctcaggatgat
gccgttgctgcagccaataggttgaagaatgcaggagtggagatcatcactgtgggtgta
aagaatgcagatgaggccgaactgaaacaggtagcgtctgagcctctggagctaaatgtg
tacaatgtgaacgatttccctctgctcagtaaactggttggccgtctggtgcgcatcctg
tgtggaaaaatggaggagcgcagcaaaacaacaggacgtgcgcatcccaccgaagaccca
aggctgtcctacccaagtcccacagacttgcgatattctgagcttggtcccaaagaggtg
cgtttgagctggacgagtcctggcagagcggtgcagcagtacagggtggtcttccacagc
agtgagggacagagcccacaggaggtggtggtgaaggggtccaattccacagcgatgcta
actggactgtcctcacagacccagtaccatgtgtcaatctttcctgtatatgcggacaat
gtgggctttccactgagaggcatcttcactacatcaatgctggccatgcctgagtctctg
gaggtcaccgcatcctctcccagcagtctccgggtgcgctggagggctgctcatggagct
actcagtacatggccctctactctgctctcactgatggagagcctgatgatgctcgagag
gtgaagtttagagctgatgagactgatgtagagctgcgagacctgatgccttctacagac
tactcagtgactgtgtacgctttatatgatgatgagccaagtgatcccgtgaccgccatc
gccaccacatttccactaccatctccactcagtttgcagttcccaatggtcagtcacagc
tctctgaaggtcacatgggtgcctggggcagttgatgttcctgcccaccgtgtcacttac
agcacaaatcatgggagtgatgtcaaacaggtggaggtggcaggtgtgaacacagtctta
ctgcagaatctgtcctctctgtccaagtatctggtgtctgtgcagtccctctatgtaaaa
ggcctgtctgctccactcactggtaacatcactacattaagggtgcctgctccgtctgag
cttcgggtcactaactactccgagaacactctaacagtacgctgggagccggctgcagac
gacgtgacctcctacctgattaaatggatctctctgagtggaggagacttgaggcagctg
aaagtggatggggagagtgaaggagccacactggagggtgttgaggatgataaagagtat
cagatctcactatctgccctctatgctgatggagcacaaagtgaggctgtggctataaga
tacagcaccttgtatgggggaggtcccactagtgtgtccatctctgaagagactgcagtc
agtatgctggtcagctgggttccccctaacgctcatgtgctgcgctaccatgtgtcctac
actcctttaactggagacgcacgggagaacaaagtgttgttgccaggcagtgaaagaaga
gttcttctgcagtctcttctccccgacactcggtacagtgtgctggttactgctgaatac
cgcaacagagagggaggcagtgcctcagcacagggcaaaaccaccagtctacgtgtgagc
agtgtgagtgtggttcggtctgatcactcaagtatctgtgtgtcctggaggccggtagca
gcggtcaatacataccgcatagtcatccaagccctcagagataagcagaaaaaggaggaa
acagtagaatctaccagcagcagtcactgtttctatgagctacatccagagacggtgtat
cggataagtgtgcattcccgcctgggaacagtagagagcactgctgtcactattctccat
cccacagctacagcaccattaagagcacacattcctccaagactacatcccatacaaaag
gaaatgtgtcctgagatgactatcaggaatagagtgattaaaggctttaacatgatggag
gcatttggtctgactcagagagcccactccactgtggagggcgtttcagtggaggctttt
atcttcagcactcttcccagctacaccatctacagagacgtacagctgacccaaagcaca
ggctttattcatccagcaggcttttctccagagcacactatcagcatggccttccgcctg
ctccaggactcgcctaaggaaccctttgctctctggcagctcactgacaatgatttccag
cccaaaatgggggtggtgttggactctgaaaggaaagtgttgctctacttcagtctggac
tacagaggagaagttcaggagcttacttttgaccaaccgcaagtccacacactcttttat
ggcagctttcacaagattcacctgtctattagtcaggtgagtgtatccctgtcagtggac
tgccagagggttggtgaaagacctgcccgtcctctaggaaacatacccactgatggcttc
gagatgctgggcaagctagtgaggactcgagggccacgcagtggctctgctgctttccag
ctgcagtcatttgagatcatatgtaacattacctgggccttagaggacacgtgctgtgac
ctgcctgctcagagagatgaggagagttgcccagctcttccatatgcgtgcacctgcact
tccaacatcccaggagcccctggggatgcaggatcacctgggaaacctggtcctcgtggg
cagaagggggaaaaaggagagggaggccaaaagggtgaaatggggcctcccggcaagcct
ggaccagagggagacttgggtcctctggggtccttgggccctcgtggtataacagtgatg
ggaaaaataggacgtccaggacttcggggagagaaaggtgaaatgggaaagcctgggagc
cagggtctgccaggaccacctggcccaaaaggtgaagagggaaatccaggacctaaggga
atcagaggtgtggagggtaacatgggacccccaggggctacaggcccaaggggcttccag
ggtctaccaggccatccagggcctgttggagaaagaggtccactcggacttgtagggccc
tcagggcttcccgggattaaaggtgagagaggagagaagggagagccacagtctcttgcc
atcatctacgaccttgtcactcaggcctgtgaaaaactagtgcacgatgaagtgcttaag
ttagatgcatttctaaatgagattcgtcgcaatcccgtgcccgttgaggagcctgttgga
cctcccggagagcctggaatgccaggtggtaaaggacccccaggacccagaggtcctcca
gggcgacaaggaaacggagggaatccaggcaaaccagggtatcctggtgaacagggacgc
aggggttcacctggtgagaagggagctccgggctctaatgtccagggaccaccaggaata
aagggtttttcaggccctccaggagaaagcaagctggggtcaccaggccctcggggtgaa
gatggtaaaacgggtatccctggtgttcccggagctgcaggacacccaggtgagagtggc
cctcctggtgtgtgtgacaacagcaactgccatcgtggaggccccccagctgcagaggat
ccatactatggataccagccttga
DBGET
integrated database retrieval system
